bg.go: Search GO Terms for Background Set

In ptm: Analyses of Protein Post-Translational Modifications

Search GO Terms for Background Set

Description

Searches the GO terms of the protein contained in a given set.

Usage

bg.go(ids)

Arguments

ids	either a vector containing the UniProt IDs of the background set or the path to the txt file containing the list of IDs acting as background.

Value

Returns a dataframe with two columns (Uniprot ID, GO terms) and as many rows as different proteins there are in the input set.

Author(s)

Juan Carlos Aledo

References

Rhee et al. (2008) Nature Reviews Genetics 9:509–515.

See Also

search.go(), term.go(), get.go(), go.enrich(), gorilla(), net.go()

Examples

## Not run: bg.go(c('P01009', 'P01374', 'Q86UP4'))

ptm documentation built on Aug. 7, 2022, 5:05 p.m.