compute.dssp: Compute and Return a DSSP File

Description Usage Arguments Details Value Author(s) References See Also Examples

View source: R/accdpx.R

Description

Computes and returns a DSSP file.

Usage

1
compute.dssp(pdb, destfile = './')

Arguments

pdb

is either a PDB id, or the path to a pdb file.

destfile

a character string with the path where the DSSP file is going to be saved.

Details

A drawback of this function is that it depends on DSSP's server and in occasions it can take a long time to process the request.

Value

An online computed dssp file that is saved at the indicated location.

Author(s)

Juan Carlos Aledo

References

Touw et al (2015) Nucl. Ac. Res. 43(Database issue): D364-D368 (PMID: 25352545).

See Also

download.dssp(), parse.dssp(), mkdssp() and acc.dssp()

Examples

1
## Not run: compute.dssp(pdb = '3cwm', destfile = './')

ptm documentation built on May 24, 2021, 9:06 a.m.

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