get.go: Get Gene Ontology Annotation

In ptm: Analyses of Protein Post-Translational Modifications

Get Gene Ontology Annotation

Description

Gets the gene ontology annotations for a given protein.

Usage

get.go(id, format = 'dataframe', silent = FALSE)

Arguments

id	the UniProt identifier of the protein of interest.
format	string indicating the output's format. It should be either 'dataframe' or 'string'. The 'string' format may be convenient when subsequent GO terms enrichment analysis is intended.
silent	logical, if FALSE print details of the reading process.

Value

Returns a dataframe (by default) with GO IDs linked to the protein of interest, as well as additional information related to these GO ids. A string with the GO ids can be obtained as output if indicated by means of the argument 'format'.

Author(s)

Juan Carlos Aledo

References

Rhee et al. (2008) Nature Reviews Genetics 9:509–515.

See Also

search.go, term.go(), bg.go(), hdfisher.go(), gorilla(), net.go()

Examples

## Not run: get.go('P01009')

ptm documentation built on Aug. 7, 2022, 5:05 p.m.