p.scan | R Documentation |
Scans the indicated protein in search of phosphosites.
p.scan(up_id, db = 'all')
up_id |
a character string corresponding to the UniProt ID. |
db |
the database where to search. It should be one among 'PSP', 'dbPTM','dbPAF', 'PhosPhAt', 'Phospho.ELM', 'all'. |
If db = 'all' has been selected, it may happen that the same residue appears in several rows if it is present in different databases.
Returns a dataframe where each row corresponds to a phosphorylatable residue.
Juan Carlos Aledo
Hornbeck et al. Nucleic Acids Res. 2019 47:D433-D441, (PMID: 30445427).
Huang et al. Nucleic Acids Res. 2019 47:D298-D308, (PMID: 30418626).
Ullah et al. Sci. Rep. 2016 6:23534, (PMID: 27010073).
Durek et al. Nucleic Acids Res.2010 38:D828-D834, (PMID: 19880383).
Dinkel et al. Nucleic Acids Res. 2011 39:D261-D567 (PMID: 21062810).
meto.scan(), ac.scan(), me.scan(), ub.scan(), su.scan(), gl.scan(), sni.scan(), ni.scan(), ptm.scan(), reg.scan(), dis.scan()
## Not run: p.scan('P01009', db = 'PSP')
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