res.dpx | R Documentation |
Computes the depth from the surface for each protein's residue.
res.dpx(pdb, aa = 'all')
pdb |
is either a PDB id, or the path to a pdb file. |
aa |
one letter code for the amino acid of interest, or 'all' for all the protein residues. |
This function computes the depth, defined as the distance in angstroms between the residue and the closest atom on the protein surface.
A dataframe with the computed depths.
Juan Carlos Aledo
Pintar et al. 2003. Bioinformatics 19:313-314 (PMID: 12538266)
atom.dpx(), acc.dssp(), str.part()
## Not run: res.dpx('1cll')
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