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#########################################
## PHASE 1: Initiation.
## Fast. Run on scheduler?
##
## NB: Number in file groups.txt used to determine Phase2 width.
##
## Two ways to call this:
## 0: use cross object as provided for perm test
## 1,2,...,nSim: run nSim times with each spawning multiple Phase2 runs.
##
## Input files:
## cross.RData
## params.txt
##
## Output files:
## Phase1.RData
## groups.txt
library(qtlhot)
parallel.qtlhot(1,commandArgs(TRUE))
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