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knitr::opts_chunk$set( collapse = TRUE, comment = "#>", eval = FALSE ) plotdir <- paste0(tempdir(), "/png/") csvdir <- paste0(tempdir(), "/csv/") dir.create(plotdir) dir.create(csvdir) # benchmarking times times <- 10
library(rBiasCorrection) samplelocusname <- "CDH1" seed <- 1234 data.table::fwrite( rBiasCorrection::example.data_experimental$dat, paste0(tempdir(), "/experimental_data.csv") ) data.table::fwrite( rBiasCorrection::example.data_calibration$dat, paste0(tempdir(), "/calibration_data.csv") ) experimental <- paste0(tempdir(), "/experimental_data.csv") calibration <- paste0(tempdir(), "/calibration_data.csv")
future::availableCores()
results_multi <- microbenchmark::microbenchmark({ rBiasCorrection::biascorrection( experimental = experimental, calibration = calibration, samplelocusname = samplelocusname, plotdir = plotdir, csvdir = csvdir, seed = seed )}, times = times )
results_multi
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