Nothing
## Probability density function(pdf) of Generalized Exponential distribution
dgen.exp <- function (x, alpha, lambda, log = FALSE)
{
if((!is.numeric(alpha)) || (!is.numeric(lambda)) || (!is.numeric(x)))
stop("non-numeric argument to mathematical function")
if((min(alpha) <= 0) || (min(lambda) <= 0) || (x <= 0))
stop("Invalid arguments")
u <- exp(log(lambda) + log(x))
pdf <- exp(log(alpha) + log(lambda) - u + (alpha - 1.0) * log(1.0 - exp(-u)))
if(log)
pdf <- log(pdf)
return(pdf)
}
##****************************************************************************
## Cummulative distribution function(cdf) of Generalized Exponential distribution
pgen.exp <- function (q, alpha, lambda, lower.tail = TRUE, log.p = FALSE)
{
if((!is.numeric(alpha)) || (!is.numeric(lambda)) || (!is.numeric(q)))
stop("non-numeric argument to mathematical function")
if((min(alpha) <= 0) || (min(lambda) <= 0) || (q <= 0))
stop("Invalid arguments")
u <- exp(log(lambda) + log(q))
cdf <- exp(alpha * log(1.0 - exp(-u)))
if(!lower.tail)
cdf <- 1.0 - cdf
if(log.p)
cdf <- log(cdf)
return(cdf)
}
##****************************************************************************
## Quantile function of Generalized Exponential distribution
qgen.exp <- function (p, alpha, lambda, lower.tail = TRUE, log.p = FALSE)
{
if((!is.numeric(alpha)) || (!is.numeric(lambda)) || (!is.numeric(p)))
stop("non-numeric argument to mathematical function")
if((min(alpha) <= 0) || (min(lambda) <= 0) || (p <= 0) || (p > 1))
stop("Invalid arguments")
qtl <- - (1.0 / lambda) * log(1.0 - (p ^ (1.0 / alpha)))
if(!lower.tail)
qtl <- - (1.0/lambda) * log(1.0 - ((1.0 - p) ^ (1.0 / alpha)))
if(log.p)
qtl <- log(qtl)
return(qtl)
}
##****************************************************************************
## Random variate generation from Generalized Exponential distribution
rgen.exp <- function(n, alpha, lambda)
{
if((!is.numeric(alpha)) || (!is.numeric(lambda)) || (!is.numeric(n)))
stop("non-numeric argument to mathematical function")
if((min(alpha) <= 0) || (min(lambda) <= 0) || (n <= 0))
stop("Invalid arguments")
return(-(1.0/lambda) * log(1.0 - (runif(n) ^ (1/alpha))))
}
##****************************************************************************
## Reliability function of Generalized Exponential distribution
sgen.exp <- function (x, alpha, lambda)
{
if((!is.numeric(alpha)) || (!is.numeric(lambda)) || (!is.numeric(x)))
stop("non-numeric argument to mathematical function")
if((min(alpha) <= 0) || (min(lambda) <= 0) || (x <= 0))
stop("Invalid arguments")
u <- exp(log(lambda) + log(x))
return(1.0 - exp(alpha * log(1.0 - exp(-u))))
}
##****************************************************************************
## Hazard function of Generalized Exponential distribution
hgen.exp <- function (x, alpha, lambda)
{
if((!is.numeric(alpha)) || (!is.numeric(lambda)) || (!is.numeric(x)))
stop("non-numeric argument to mathematical function")
if((min(alpha) <= 0) || (min(lambda) <= 0) || (x <= 0))
stop("Invalid arguments")
u <- exp(log(lambda) + log(x))
num <- exp(log(alpha) + log(lambda) - u + (alpha -1.0) * log(1.0 - exp(-u)))
den <- 1.0 - exp(alpha * log(1.0 - exp(-u)))
return(num/den)
}
##****************************************************************************
## Hazard rate average function of Generalized Exponential distribution
hra.gen.exp <- function(x, alpha, lambda)
{
r <- sgen.exp(x, alpha, lambda)
return(((-1) * log(r)) / x)
}
##****************************************************************************
## Conditional Hazard rate function of Generalized Exponential distribution
crf.gen.exp <- function(x, t = 0, alpha, lambda)
{
t <- t
x <- x
nume <- hgen.exp(x + t, alpha, lambda)
deno <- hgen.exp(x, alpha, lambda)
return(nume/deno)
}
##****************************************************************************
## Kolmogorov-Smirnov test (One-sample)for Generalized Exponential distribution
ks.gen.exp <- function(x, alpha.est, lambda.est,
alternative = c("less", "two.sided", "greater"), plot = FALSE, ...)
{
alpha <- alpha.est
lambda <- lambda.est
res <- ks.test(x, pgen.exp, alpha, lambda, alternative = alternative)
if(plot){
plot(ecdf(x), do.points = FALSE, main = 'Empirical and Theoretical cdfs',
xlab = 'x', ylab = 'Fn(x)', ...)
mini <- min(x)
maxi <- max(x)
t <- seq(mini, maxi, by = 0.01)
y <- pgen.exp(t, alpha, lambda)
lines(t, y, lwd = 2, col = 2)
}
return(res)
}
##****************************************************************************
## Quantile-Quantile(QQ) plot for Generalized Exponential distribution
qq.gen.exp <- function(x, alpha.est, lambda.est, main = ' ', line.qt = FALSE, ...)
{
xlab <- 'Empirical quantiles'
ylab <- 'Theoretical quantiles'
alpha <- alpha.est
lambda <- lambda.est
n <- length(x)
k <- seq(1, n, by = 1)
P <- (k-0.5)/n
limx <- c(min(x), max(x))
Finv <- qgen.exp(P, alpha, lambda)
quantiles <- sort(x)
plot(quantiles, Finv, xlab = xlab, ylab = ylab, xlim = limx,
ylim = limx, main = main, col = 4, lwd = 2, ...)
lines(c(0,limx), c(0,limx), col = 2, lwd = 2)
if(line.qt){
quant <- quantile(x)
x1 <- quant[2]
x2 <- quant[4]
y1 <- qgen.exp(0.25, alpha, lambda)
y2 <- qgen.exp(0.75, alpha, lambda)
m <- ((y2-y1) / (x2-x1))
inter <- y1 - (m * x1)
abline(inter, m, col = 2, lwd = 2)
}
invisible(list(x = quantiles, y = Finv))
}
##****************************************************************************
## Probability-Probability (PP) plot for Generalized Exponential distribution
pp.gen.exp <- function(x, alpha.est,lambda.est,main = ' ',line = FALSE, ...)
{
xlab <- 'Empirical distribution function'
ylab <- 'Theoretical distribution function'
alpha <- alpha.est
lambda <- lambda.est
F <- pgen.exp(x, alpha, lambda)
Pemp <- sort(F)
n <- length(x)
k <- seq(1, n, by = 1)
Pteo <- (k - 0.5) / n
plot(Pemp, Pteo, xlab = xlab, ylab = ylab, col = 4,
xlim = c(0, 1), ylim = c(0, 1), main = main, lwd = 2, ...)
if(line)
lines(c(0, 1), c(0, 1), col = 2, lwd = 2)
Cor.Coeff <- cor(Pemp, Pteo)
Determination.Coeff <- (Cor.Coeff^2) * 100
return(list(Cor.Coeff = Cor.Coeff, Determination.Coeff = Determination.Coeff))
}
##****************************************************************************
## Akaike information criterium (AIC) and
## Bayesian information criterion (BIC)for Generalized Exponential distribution
abic.gen.exp <- function(x, alpha.est, lambda.est){
alpha <- alpha.est
lambda <- lambda.est
n <- length(x)
p <- 2
f <- dgen.exp(x, alpha, lambda)
l <- log(f)
LogLik <- sum(l)
AIC <- - 2 * LogLik + 2 * p
BIC <- - 2 * LogLik + p * log(n)
return(list(LogLik = LogLik, AIC = AIC, BIC = BIC))
}
###****************************************************************************
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