R/yyy.R

In rstanemax: Emax Model Analysis with 'Stan'

# Set globalVariables to minimize R CMD check notes


if(getRversion() >= "2.15.1"){
  # General
  utils::globalVariables(c('.'))

  # posterior predict
  utils::globalVariables(c('e0', 'emax', 'emax', 'exposure', 'ec50', 'respHat', 'sigma', 'mcmcid', 'dataid'))

  # plot.stanemax
  utils::globalVariables(c('response', 'ci_low', 'ci_med', 'ci_high', 'pi_low', 'pi_high'))

  # create cov groups
  utils::globalVariables(c('covemax', 'covec50', 'cove0', 'covemaxstr', 'covec50str', 'cove0str',
                           'covemaxfct', 'covec50fct', 'cove0fct', 'Covariates'))

  # replace_prm_names
  utils::globalVariables(c('prmname', 'prmname2', 'index', 'prm', 'level'))
}


# Data description
#' Sample simulated data for exposure-response.
#'
#' @format A data frame with columns:
#' \describe{
#' \item{dose}{Dose levels used for simulation of pharmacokinetics}
#' \item{exposure}{Simulated exposure}
#' \item{response}{Simulated pharmacodynamic response}
#' }
#' @examples
#' exposure.response.sample
"exposure.response.sample"



#' Sample simulated data for exposure-response with covariates
#'
#' @format A data frame with columns:
#' \describe{
#' \item{dose}{Dose levels used for simulation of pharmacokinetics}
#' \item{conc}{Simulated exposure}
#' \item{resp}{Simulated pharmacodynamic response}
#' \item{cov1}{Covariate 1 for e0}
#' \item{cov2}{Covariate 2 for emax}
#' \item{cov3}{Covariate 3 for ec50 (data type factor)}
#' \item{cov3num}{Covariate 3 for ec50 (data type numeric)}
#' }
#' @examples
#' exposure.response.sample
"exposure.response.sample.with.cov"