Nothing
## ----eval=FALSE, echo=TRUE, tidy=FALSE, size='footnotesize'--------------
# N.pla <- 1900
# N.vax <- 1700
# aveVElist <- list(-2, -1.5, -1, -0.5, 0, 0.1, 0.2, 0.3, 0.4, 0.5, 0.6, 0.7, 0.8, c(0,0), c(0.4,0),
# c(0.4,0.4), c(0.4,0.2), c(0.4,0.3), c(0.5,0.3), c(0.5,0.4), c(0.6,0.3), c(0.6,0.4))
# infRate <- 0.04
# estimand <- "cuminc"
# laggedMonitoring <- TRUE
# lagTime <- 26
# outDir <- "./"
## ----eval=FALSE, echo=TRUE, tidy=FALSE, size='footnotesize'--------------
# for (i in 1:length(aveVElist)){
# simTrial(N=c(N.pla, rep(N.vax, length(aveVElist[[i]]))), aveVE=c(0, aveVElist[[i]]),
# VEmodel="half", vePeriods=c(1,27,79), enrollPeriod=78, enrollPartial=13,
# enrollPartialRelRate=0.5, dropoutRate=0.05, infecRate=infRate, fuTime=156,
# visitSchedule=c(0, (13/3)*(1:4), seq(13*6/3, 156, by=13*2/3)),
# missVaccProb=c(0,0.05,0.1,0.15), VEcutoffWeek=26, nTrials=1000,
# blockSize=NULL, stage1=78, saveDir=outDir, randomSeed=9)
#
# monitorTrial(dataFile=
# paste0("simTrial_nPlac=",N.pla,"_nVacc=",
# paste(rep(N.vax, length(aveVElist[[i]])), collapse="_"),
# "_aveVE=",paste(aveVElist[[i]], collapse="_"),"_infRate=",infRate,".RData"),
# stage1=78, stage2=156, harmMonitorRange=c(10,100), alphaPerTest=NULL,
# nonEffStartMethod="FKG", nonEffInterval=20, lowerVEnoneff=0, upperVEnoneff=0.4,
# stage1VE=0, lowerVEuncPower=0, highVE=0.6, alphaNoneff=0.05, alphaStage1=0.05,
# alphaUncPower=0.05, alphaHigh=0.05, estimand=estimand,
# laggedMonitoring=laggedMonitoring, lagTime=lagTime, saveDir=outDir)
#
# censTrial(dataFile=
# paste0("simTrial_nPlac=",N.pla, "_nVacc=",
# paste(rep(N.vax, length(aveVElist[[i]])), collapse="_"),"_aveVE=",
# paste(aveVElist[[i]], collapse="_"),"_infRate=",infRate,".RData"),
# monitorFile=
# paste0("monitorTrial_nPlac=", N.pla, "_nVacc=",
# paste(rep(N.vax, length(aveVElist[[i]])), collapse="_"),"_aveVE=",
# paste(aveVElist[[i]], collapse="_"),"_infRate=",infRate,"_",estimand,".RData"),
# stage1=78, stage2=156, saveDir=outDir)
#
# if (i %in% 17:22){
# rankTrial(censFile=
# paste0("trialDataCens_nPlac=",N.pla,"_nVacc=",
# paste(rep(N.vax, length(aveVElist[[i]])), collapse="_"),"_aveVE=",
# paste(aveVElist[[i]], collapse="_"),"_infRate=",infRate,"_",estimand,".RData"),
# idxHighestVE=1, headHead=matrix(1:2, nrow=1, ncol=2), lowerVE=0, stage1=78, stage2=156,
# alpha=0.05, saveDir=outDir)
# }
# }
#
# VEpowerPP(dataList=
# as.list(paste0("trialDataCens_nPlac=", N.pla, "_nVacc=", N.vax, "_aveVE=",
# do.call("c", aveVElist[5:13]), "_infRate=",infRate,"_",estimand,".RData")),
# lowerVEuncPower=0, alphaUncPower=0.05, VEcutoffWeek=26, stage1=78,
# outName=paste0("VEpwPP_nPlac=", N.pla, "_nVacc=", N.vax, "_infRate=",infRate,".RData"),
# saveDir=outDir)
## ----eval=FALSE, echo=TRUE, tidy=FALSE-----------------------------------
# browseVignettes(package="seqDesign")
Any scripts or data that you put into this service are public.
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.