R/sgCount.R

sgCount <-
function(fqInfo, annotation, seqlen=20, output_prefix='sgCount'){
    path <-paste(system.file(package="sgRSEA"), "sgCount_R.py", sep="/")
    command <- paste("python", path, fqInfo, annotation, seqlen, output_prefix)
    response <- system(command,intern=T)
    print(response)
    }

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sgRSEA documentation built on May 2, 2019, 2:47 p.m.