Nothing
## ----chunkname, echo=-1-------------------------------------------------------
data.table::setDTthreads(2)
## ----echo = FALSE, message = FALSE--------------------------------------------
library(simstudy)
library(ggplot2)
library(scales)
library(grid)
library(gridExtra)
library(survival)
library(gee)
library(data.table)
plotcolors <- c("#B84226", "#1B8445", "#1C5974")
cbbPalette <- c("#B84226","#B88F26", "#A5B435", "#1B8446",
"#B87326","#B8A526", "#6CA723", "#1C5974")
ggtheme <- function(panelback = "white") {
ggplot2::theme(
panel.background = element_rect(fill = panelback),
panel.grid = element_blank(),
axis.ticks = element_line(colour = "black"),
panel.spacing =unit(0.25, "lines"), # requires package grid
panel.border = element_rect(fill = NA, colour="gray90"),
plot.title = element_text(size = 8,vjust=.5,hjust=0),
axis.text = element_text(size=8),
axis.title = element_text(size = 8)
)
}
## ----tidy = TRUE--------------------------------------------------------------
gen.school <- defData(varname="s0", dist = "normal",
formula = 0, variance = 3, id = "idSchool"
)
gen.school <- defData(gen.school, varname = "nClasses",
dist = "noZeroPoisson", formula = 3
)
set.seed(282721)
dtSchool <- genData(8, gen.school)
dtSchool <- trtAssign(dtSchool, n = 2)
dtSchool
## ----tidy = TRUE--------------------------------------------------------------
gen.class <- defDataAdd(varname = "c0", dist = "normal", formula = 0,
variance = 2)
gen.class <- defDataAdd(gen.class, varname = "nStudents", dist = "noZeroPoisson", formula = 20
)
dtClass <- genCluster(dtSchool, "idSchool", numIndsVar = "nClasses",level1ID = "idClass")
dtClass <- addColumns(gen.class, dtClass)
head(dtClass, 10)
## ----tidy = TRUE, tidy.opts= list(width.cutoff = 60)--------------------------
gen.student <- defDataAdd(varname="Male", dist="binary", formula=0.5)
gen.student <- defDataAdd(gen.student, varname="age", dist = "uniform", formula="9.5; 10.5")
gen.student <- defDataAdd(gen.student, varname="test", dist = "normal",
formula = "50 - 5*Male + s0 + c0 + 8 * trtGrp", variance = 2)
dtStudent <- genCluster(dtClass,cLevelVar="idClass", numIndsVar = "nStudents", level1ID = "idChild")
dtStudent <- addColumns(gen.student, dtStudent)
## ----tidy = TRUE, echo = FALSE, fig.width = 7, fig.height = 3-----------------
ggplot(data=dtStudent,aes(x=factor(idClass),y=test,group=idClass)) +
geom_boxplot(aes(color=factor(trtGrp), fill = factor(idSchool)))+
xlab("Classes")+
ylab("Test scores") +
theme(axis.text.x=element_blank(),
axis.ticks.x=element_blank()) +
scale_fill_manual(values = cbbPalette, guide = FALSE) +
scale_color_manual(values = c("grey80", "#000000"),
labels = c("Ctrl", "Rx"),
guide = guide_legend(title = NULL,
override.aes = list(shape = 1,
keywidth=8
)
)
) +
theme(legend.key=element_rect(fill=NA)) +
ggtheme()
## -----------------------------------------------------------------------------
d1 <- defData(varname = "clustSize", formula = 120, dist = "clusterSize")
genData(8, d1, id = "site")
genData(7, d1, id = "site")
## -----------------------------------------------------------------------------
d1 <- defData(varname = "clustSize", formula = 120,
variance = .1, dist = "clusterSize")
genData(8, d1, id = "site")
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