NEWS.md

In ssw: Striped Smith-Waterman Algorithm for Sequence Alignment using SIMD

ssw 0.2.1

Improvements

• Replace knitr code chunks with Markdown code blocks in vignettes to resolve R CMD check error for CRAN macOS r-oldrel environments (#20).
• Move .onLoad() logic into R/zzz.R following convention (#18).
• Use single quotes for 'C' and 'C++' in DESCRIPTION (#21).

ssw 0.2.0

Improvements

• Add helper function install_ssw_py() for easy installation of Python package dependency following best practices (#9).
• Use consistent symbol name ssw_py for the imported Python package (#10).
• Update reticulate wrapper to work with ssw-py >= 1.0.0 (#11).
• Qualify namespaces explicitly when calling external functions (#15).

Documentation

• Run code examples and vignette code chunks conditionally (#5).
• Use GitHub Actions workflows to run R CMD check and to build pkgdown site (#6).
• Update installation sections in README.md (#12).
• Rewrite function reference documentation to improve clarity (#14).

ssw 0.1.1

• Added two arguments match_score and mismatch_penalty for scoring the matches and mismatches (#1).

ssw 0.1.0

• First version. Implements align() and force_align().

ssw documentation built on Sept. 18, 2024, 9:07 a.m.