sequence2gtypes: Convert Sequences To 'gtypes'
In strataG: Summaries and Population Structure Analyses of Genetic Data

Description Usage Arguments Value Author(s) See Also Examples

Create a gtypes object from sequence data.

sequence2gtypes(
  x,
  strata = NULL,
  seq.names = NULL,
  schemes = NULL,
  description = NULL,
  other = NULL
)

`x`	DNA sequences as a character matrix, a `DNAbin` object, or multidna object.
`strata`	a vector or factor giving stratification for each sequence. If not provided all individuals are assigned to the same stratum (Default).
`seq.names`	names for each set of sequences. If not provided default names are generated.
`schemes`	an optional data.frame of stratification schemes.
`description`	an optional label for the object.
`other`	a list to carry other related information (optional).

a gtypes object.

Eric Archer eric.archer@noaa.gov

gtypes.initialize, as.matrix.gtypes, as.data.frame.gtypes, gtypes2genind, gtypes2loci, gtypes2phyDat

#--- create a haploid sequence (mtDNA) gtypes object
data(dolph.strata)
data(dolph.seqs)
strata <- dolph.strata$fine
names(strata) <- dolph.strata$ids
dloop.fine <- sequence2gtypes(dolph.seqs, strata, seq.names = "dLoop", 
description = "dLoop: fine-scale stratification")