Internal superpc functions

Description

Internal superpc functions

Usage

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cor.func(x, y,  s0.perc) 
coxfunc(x, y, censoring.status,  s0.perc) 
coxscor(x, y, ic, offset = rep(0, length(y))) 
coxvar(x, y, ic, offset = rep(0, length(y)), coxstuff.obj = NULL) 
mysvd(x, n.components = NULL) 
superpc.xl.fit.to.clin(fit, data.test,score, pamr.xl.test.sample.labels, pamr.xl.clindata,pamr.xl.clinsamplabels, pamr.xl.clinprednames, pamr.xl.clinpredtype )
superpc.xl.get.threshold.range(train.obj)
superpc.xl.listgenes.compute(data, train.obj, fit.red, fitred.cv=NULL,num.genes=NULL, component.number = 1)
superpc.xl.decorrelate(data, pamr.xl.train.sample.labels, pamr.xl.clindata, pamr.xl.clinsamplabels, pamr.xl.clinprednames, pamr.xl.clinpredtype)
superpc.xl.decorrelate.test(object.decorr, xtest, pamr.xl.train.sample.labels, pamr.xl.clindata, pamr.xl.clinsamplabels, pamr.xl.clinprednames, pamr.xl.clinpredtype)
superpc.xl.rainbowplot(data, pred,  pamr.xl.test.sample.labels,  pamr.xl.clindata, pamr.xl.clinsamplabels, pamr.xl.clinprednames,  pamr.xl.clinpredtype, call.win.metafile=FALSE)

Details

These are not to be called by the user.

Author(s)

Eric Bair and Rob Tibshirani