taxotools: taxotools: Taxonomic List processing

taxotoolsR Documentation

taxotools: Taxonomic List processing

Description

Taxonomic lists matching and merging, casting and melting scientific names, managing taxonomic lists from Global Biodiversity Information Facility 'GBIF' or Integrated Taxonomic Information System 'ITIS', harvesting names from Wikipedia and fuzzy matching.

List functions

  • cast_cs_field

  • compact_ids

  • DwC2taxo

  • get_synonyms

  • match_lists

  • melt_cs_field

  • merge_lists

  • syn2taxo

  • synonymize_subspecies

  • taxo2doc

  • taxo2DwC

  • taxo2syn

  • wiki2taxo

Name functions

  • build_gen_syn

  • cast_canonical

  • cast_scientificname

  • check_scientific

  • expand_name

  • get_accepted_names

  • guess_taxo_rank

  • list_higher_taxo

  • melt_canonical

  • melt_scientificname

  • resolve_names

  • taxo_fuzzy_match

ITIS functions

  • get_itis_syn

  • list_itis_syn

Wiki functions

  • list_wiki_syn

Citation

  • Barve, V., (2021). taxotools: Tools to handle taxonomic data (R package V 0.0.79). Retrieved from https://doi.org/10.5281/zenodo.3934939


taxotools documentation built on Jan. 23, 2023, 5:24 p.m.