Nothing
context("thinAndBurn.evmSim")
test_that("thinAndBurn.evmSim behaves as it should", {
skip_on_cran()
skip_on_travis()
# generate data to use for checking
d <- sample(3:10,1)
nrow <- 100
x <- list(chains = list(apply(matrix(rep(1:d,each=nrow),ncol=d),2, function(o) o*1:nrow)))
oldClass(x) <- "evmSim"
# test appropriate errors for misspecification of thin and burn
expect_error(thinAndBurn(x, burn=2), label="thinAndBurn.evmSim:errorsformisspecificationofthinandburn")
expect_error(thinAndBurn(x, thin=1), label="thinAndBurn.evmSim:errorsformisspecificationofthinandburn")
# test burn in
burn <- sample(nrow/2,1)
burnOnly <- thinAndBurn(x, burn=burn,thin=1)
expect_that(x$chains[[1]][burn+1, ], equals(burnOnly$param[1, ]), label="thinAndBurn.evmSim:burnin")
# test thinning
thin <- 2
thinOnly <- thinAndBurn(x,thin=thin,burn=0)
expect_that(seq(thin, nrow, by=thin), equals(thinOnly$param[, 1]), label="thinAndBurn.evmSim:thinning")
# test thinning and burning simultaneously
thinBurn <- thinAndBurn(x,thin=thin,burn=burn)
expect_that(seq(burn+thin, nrow, by=thin), equals(thinBurn$param[, 1]), label="thinAndBurn.evmSim:thinningandburningsimultaneously")
# test returned values of thin and burn
expect_that(thin, equals(thinBurn$thin, burn=0), label="thinAndBurn.evmSim:testreturnedvalueofthin")
expect_that(burn, equals(thinBurn$burn, thin=1), label="thinAndBurn.evmSim:testreturnedvalueofburn")
# test passing thin and burn via object
x$thin <- thin
x$burn <- burn
thinBurn1 <- thinAndBurn(x)
expect_that(seq(burn+thin, nrow, by=thin), equals(thinBurn1$param[, 1]), label="thinAndBurn.evmSim:testpassingthinandburnviaobject")
expect_that(dim(thinBurn$param), equals(dim(thinBurn1$param)), label="thinAndBurn.evmSim:testpassingthinandburnviaobject")
# test thinning and burning a previously thinned and burned object
thin2 <- 4
burn2 <- 4
thinBurn2 <- thinAndBurn(thinBurn1,thin=thin2,burn=burn2)
expect_that(dim(thinBurn1$chains)[2], equals(dim(thinBurn2$chains)[2]), label="thinAndBurn.evmSim:thinningandburningapreviouslythinnedandburnedobject")
expect_that((nrow-burn2)/thin2, equals(dim(thinBurn2$param)[1]), label="thinAndBurn.evmSim:thinningandburningapreviouslythinnedandburnedobject")
}
)
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