showModule: Select genes belonging to a module from a data frame

Description Usage Arguments Details

View source: R/visualizations.R

Description

Select genes belonging to a module from a data frame or vector

Usage

1
showModule(x, genes, module, mset = "all", extra = TRUE)

Arguments

x

a data frame or a vector

genes

a character vector with gene IDs

module

a single character value, ID of the module to be shown

mset

Module set to use; see "tmodUtest" for details

extra

If true, additional information about the features will be shown

Details

showModule filters a data frame or a vector such that only genes from a module are shown. Use it, for example, to show a subset of topTable result from limma in order to see which genes from a module are significantly regulated. In essence, this is just a wrapper around "subset()".


tmod documentation built on May 29, 2017, 11:06 p.m.