Nothing
veg_diversity()
and functions calculating diversity indices:
shannon()
, evenness()
, dominance()
, simpson()
, and richness()
.new_relation()
inserting new relations into vegtable
objects.
This function is internally called by veg_relation()
.df2coverconvert()
coercing data frames and lists into
coverconvert
objects.data.frame
.taxlist
in_header
defined in several functions is set as
in_header = TRUE
.match_names()
, merge_taxa()
. These functions are now
exclusive for objects of class taxlist
.names()
for vegtable
objects will retrieve a list with all names
from the respective slots.as()
and as<-
.trait_proportion()
and trait_stats()
are also adding results to
the slot relations.taxa2samples()
when setting an argument in
the parameter 'merge_to'
, which was not properly working in all cases.used_concepts()
to extract taxon concepts that are occurring
in the plot observations.cover_trans()
in replacement of transform()
syntax
in vegtable
objects.show()
and print()
methods for objects vegtable
, coverconvert
,
and shaker
.make_cocktail()
, names of syntaxa are allowed to start with numerical values.write_juice()
includes a messages when working and with some
metadata for cross-check when importing in Juice.taxa2samples()
setting the levels to be included
in output object (include_levels
) and to remove taxa without levels
(na.rm
).subset()
extended to content in slot relations.vegtable2kml()
was deprecated to resolve dependencies on GIS
packages associated to package plotKML
.summary()
also providing number of plots with records.transform()
deprecated and replaced by cover_trans()
.write_juice()
in Linux are now readable in Windows.clean()
objects with no entries resulted in invalid objects.count_taxa()
for aggregating ranks with missing records for lower
taxa.roxygen2
.preserve_ids
in function add_releves()
.count_taxa()
adapted to the current package taxlist
.relation2header()
.trait_stats()
and trait_proportion()
.add_traits
in function taxa2samples()
.count_taxa()
, formula-method, indicates the counted rank in the output.write_juice()
for general cases.as_matrix
in function crosstable()
alternating matrix
or data.frame
as output.suffix
and in_header
for the function count_taxa()
.taxa2samples()
was not properly working when taxlist
had taxon concepts without level information.aspect_conv
.taxa2samples()
for changing record names by their respective accepted names.count_taxa()
implemented for vegtable
objects.Kenya_veg
Including hierarchical ranks.cross2db
was not working properly for tables with only one columnnumeric
values in function transform()
.match_names()
for vegtable
objects.layers2samples()
.add_releves()
, adding releves from data frames into vegtable
objects.LayerID
in prototype for vegtable
objects.NA
values are allowed for layers in slot samples
.layers
will be deleted by function clean()
.match_header
included in function veg_relation()
.NA
values in TaxonUsageID
at slot samples
.aggregate
.layers
added to vegtable
objects.subset
working similarly to taxlist::subset
.clean
does not modify slot species
.crosstable
access also to taxon traits.use_nas
for function crosstable
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