Plots the interval blups/outlier statistics for
specified iterations of `wgaim`

. The interval blups/outlier statistics appear as
a trace across the genome separated by chromosome and appropriately
spaced by their distances.

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`object` |
object of class " |

`intervalObj` |
object of class " |

`int` |
logical value, if |

`iter` |
numeric value determining which iterations will be plotted |

`chr` |
character vector naming the subset of chromosomes to
plot. This can only be used when |

`stat` |
character string naming the value to be plotted. Default is "os" (outlier statistics). Other option is "blups" for the scaled empirical blups calculated during each iteration |

`...` |
arguments passed to " |

By default the interval blups/outlier statistics are plotted in separate
panels for each iteration in a set layout of 5 rows and one column. This
cannot be adjusted and users should not attempt to use the `layout`

argument. Viewing multiple pages can be done by specifying the
appropriate iterations using the `iter`

argument.

The set of QTL are obtained from the model and printed on the plot in their appropriate positions in each panel.

The blups/outlier statistics are plotted in a trellis panel plot.

Julian Taylor

Julian Taylor, Arunas Vebyla (2011). R Package wgaim: QTL Analysis in
Bi-Parental Populations Using Linear Mixed Models. *Journal of
Statistical Software*, **40**(7), 1-18. URL http://www.jstatsoft.org/v40/i07/.

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Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

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