Plots the interval blups/outlier statistics for
specified iterations of wgaim
. The interval blups/outlier statistics appear as
a trace across the genome separated by chromosome and appropriately
spaced by their distances.
1 2 |
object |
object of class " |
intervalObj |
object of class " |
int |
logical value, if |
iter |
numeric value determining which iterations will be plotted |
chr |
character vector naming the subset of chromosomes to
plot. This can only be used when |
stat |
character string naming the value to be plotted. Default is "os" (outlier statistics). Other option is "blups" for the scaled empirical blups calculated during each iteration |
... |
arguments passed to " |
By default the interval blups/outlier statistics are plotted in separate
panels for each iteration in a set layout of 5 rows and one column. This
cannot be adjusted and users should not attempt to use the layout
argument. Viewing multiple pages can be done by specifying the
appropriate iterations using the iter
argument.
The set of QTL are obtained from the model and printed on the plot in their appropriate positions in each panel.
The blups/outlier statistics are plotted in a trellis panel plot.
Julian Taylor
Julian Taylor, Arunas Vebyla (2011). R Package wgaim: QTL Analysis in Bi-Parental Populations Using Linear Mixed Models. Journal of Statistical Software, 40(7), 1-18. URL http://www.jstatsoft.org/v40/i07/.
1 2 3 4 5 6 7 8 9 10 11 12 |
Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.
Please suggest features or report bugs with the GitHub issue tracker.
All documentation is copyright its authors; we didn't write any of that.