Files in 100sunflower100/MethylChiPAnno

.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
GSM1247787.soft
GeneFunction.pdf
MethylChiPAnno.Rproj
MethylChiPAnno_Kasia.Rproj
NA
NAMESPACE
R/.DS_Store
R/.Rapp.history
R/Data_Analysis.R R/GRsetFromGEO.R R/KasperDH.R R/MethylChiPAnno.R R/NASZEfindDMR.R R/PreprocessKasia.R R/SNPs.R R/annoPeakPathway.R R/annotatePeak.R R/chippeakanno.R R/findBlocks.R R/findDMP.R R/findDMR.R R/getGEO.R
README.txt
RGprocessing.R
annotate_peak/.DS_Store
annotate_peak/.hg/00changelog.i
annotate_peak/.hg/branch
annotate_peak/.hg/cache/branch2-served
annotate_peak/.hg/cache/rbc-names-v1
annotate_peak/.hg/cache/rbc-revs-v1
annotate_peak/.hg/dirstate
annotate_peak/.hg/hgrc
annotate_peak/.hg/requires
annotate_peak/.hg/store/00changelog.i
annotate_peak/.hg/store/00manifest.i
annotate_peak/.hg/store/data/annotate_peak/annotate_peak._r.i
annotate_peak/.hg/store/data/annotate_peak/annotate_peak.xml.i
annotate_peak/.hg/store/data/annotate_peak/test-data/_d_m_r.bed.i
annotate_peak/.hg/store/data/annotate_peak/test-data/anno_peak_table.csv.d
annotate_peak/.hg/store/data/annotate_peak/test-data/anno_peak_table.csv.i
annotate_peak/.hg/store/data/annotate_peak/test-data/~2e__._d_s___store.i
annotate_peak/.hg/store/data/annotate_peak/tool__dependencies.xml.i
annotate_peak/.hg/store/data/annotate_peak/~20tool__dependencies.xml.i
annotate_peak/.hg/store/data/annotate_peak/~2e__._d_s___store.i
annotate_peak/.hg/store/data/annotate_peak/~2e__tool__dependencies.xml.i
annotate_peak/.hg/store/data/annotate_peak/~2e_r_data.d
annotate_peak/.hg/store/data/annotate_peak/~2e_r_data.i
annotate_peak/.hg/store/data/annotate_peak/~2e_rapp.history.i
annotate_peak/.hg/store/data/annotate_peak/~2e_rhistory.i
annotate_peak/.hg/store/fncache
annotate_peak/.hg/store/phaseroots
annotate_peak/.hg/store/undo
annotate_peak/.hg/store/undo.backupfiles
annotate_peak/.hg/store/undo.phaseroots
annotate_peak/.hg/undo.bookmarks
annotate_peak/.hg/undo.branch
annotate_peak/.hg/undo.desc
annotate_peak/.hg/undo.dirstate
annotate_peak/annotatePeak.R
annotate_peak/annotatePeak.xml
annotate_peak/test-data/DMR.bed
annotate_peak/test-data/annoPeakTable.csv
annotate_peak/tool_dependencies.xml
geneFunction.csv
getGRsetFromGEO.R
getGRsetFromGEO.xml
outputfDMR.csv
package_methyldata1.16.2/ tool_dependencies.xml
papers/.DS_Store
papers/figures/.DS_Store
papers/figures/FIG1.png
papers/figures/FIG2.pdf papers/figures/FIG2a.pdf papers/figures/FIG2b.pdf
papers/figures/Screen Shot 2017-02-20 at 14.12.33.png
papers/supplementary/.DS_Store
papers/supplementary/DMR.bed
papers/supplementary/GSMTable.csv
papers/supplementary/GSMTable.txt
papers/supplementary/IlmnTable.csv
papers/supplementary/MetaTable.csv
papers/supplementary/annoPeakTable.csv
papers/supplementary/geneFunction.csv
papers/supplementary/gmTable.csv
papers/supplementary/input.csv
test-data/.DS_Store
test-data/.gitignore
test-data/DMPs.txt
test-data/DMR.bed
test-data/DMRs.txt
test-data/GSMTable.csv
test-data/IlmnTable.csv
test-data/MetaTable.csv
test-data/PhenoTab.csv
test-data/SNPs.txt
test-data/annoPeakFigure.png
test-data/annoPeakPathway.png
test-data/annoPeakTable.csv
test-data/genes_within_5KB_of_DMR.txt
test-data/genomeAnnotable.csv
test-data/gmTable.csv
test-data/go_term_bp_4_genes_within_5KB_of_DMR.txt
test-data/go_term_bp_5_genes_within_5KB_of_DMR.txt
test-data/go_term_bp_all_genes_within_5KB_of_DMR.txt
test-data/go_term_bp_fat_genes_within_5KB_of_DMR.txt
test-data/go_term_mf_4_genes_within_5KB_of_DMR.txt
test-data/go_term_mf_5_genes_within_5KB_of_DMR.txt
test-data/input.csv
tool_dependencies.xml
xml/ tool_dependencies.xml
xml/GRsetFromGEO.xml
xml/MCA.xml
xml/SNPs.xml
xml/annoPeakFigure.xml
xml/annotatePeak.xml
xml/findBlocks.xml
xml/findDMP.xml
xml/findDMR.xml
xml/getGEO.xml
xml/tool_confGalaxy.xml
100sunflower100/MethylChiPAnno documentation built on May 28, 2017, 6:58 p.m.