source("R/global.R")
source("R/plot.R")
source("R/utils.R")
circos.par("cell.padding" = c(0, 0, 0, 0), gap.degree = 0)
circos.initialize(factors = "a", xlim = c(0,1))
circos.trackPlotRegion(ylim = c(0, 1), track.height = 0.4)
lines.expand(c(0,1), c(0,1), sector.index = "a", track.index = 1)
circos.lines(c(0,1), c(1,0), sector.index = "a", track.index = 1, col=1)
lines.expand(c(1,0), c(1,0), sector.index = "a", track.index = 1)
circos.lines(c(1,0), c(1,0), sector.index = "a", track.index = 1, col =2)
lines.expand(0.5, 0.5, sector.index = "a", track.index = 1)
lines.expand(c(0.499,0.501), c(0.499,0.501), sector.index = "a", track.index = 1)
lines.expand(c(0.499,0.501, 1), c(0.499,0.501, 0.8), sector.index = "a", track.index = 1)
circos.lines(c(0.499,0.501, 1), c(0.499,0.501, 0.8), sector.index = "a", track.index = 1, col = 3, lwd = 2)
circos.clear()
circos.par("cell.padding" = c(0, 0, 0, 0), gap.degree = 0, start.degree = 90)
circos.initialize(factors = "a", xlim = c(0,1))
circos.trackPlotRegion(ylim = c(0, 1), track.height = 0.4)
lines.expand(c(0,1), c(0,1), sector.index = "a", track.index = 1)
circos.lines(c(0,1), c(1,0), sector.index = "a", track.index = 1, col=1)
lines.expand(c(1,0), c(1,0), sector.index = "a", track.index = 1)
circos.lines(c(1,0), c(1,0), sector.index = "a", track.index = 1, col =2)
lines.expand(0.5, 0.5, sector.index = "a", track.index = 1)
lines.expand(c(0.499,0.501), c(0.499,0.501), sector.index = "a", track.index = 1)
lines.expand(c(0.499,0.501, 1), c(0.499,0.501, 0.8), sector.index = "a", track.index = 1)
circos.lines(c(0.499,0.501, 1), c(0.499,0.501, 0.8), sector.index = "a", track.index = 1, col = 3)
circos.clear()
circos.par("cell.padding" = c(0, 0, 0, 0), gap.degree = 0, start.degree = -90)
circos.initialize(factors = "a", xlim = c(0,1))
circos.trackPlotRegion(ylim = c(0, 1), track.height = 0.4)
lines.expand(c(0,1), c(0,1), sector.index = "a", track.index = 1)
circos.lines(c(0,1), c(1,0), sector.index = "a", track.index = 1, col=1)
lines.expand(c(1,0), c(1,0), sector.index = "a", track.index = 1)
circos.lines(c(1,0), c(1,0), sector.index = "a", track.index = 1, col =2)
lines.expand(0.5, 0.5, sector.index = "a", track.index = 1)
lines.expand(c(0.499,0.501), c(0.499,0.501), sector.index = "a", track.index = 1)
lines.expand(c(0.499,0.501, 1), c(0.499,0.501, 0.8), sector.index = "a", track.index = 1)
circos.lines(c(0.499,0.501, 1), c(0.499,0.501, 0.8), sector.index = "a", track.index = 1, col = 3)
circos.clear()
par(mar = c(1, 1, 1, 1), lwd = 2)
factors = letters[1:2]
for (theta in seq(-360, 360, by = 30)) {
circos.par(start.degree = theta, cell.padding=c(0,0,0,0), gap.degree = 0)
circos.initialize(factors = factors, xlim = c(0, 1))
circos.trackPlotRegion(ylim = c(0, 1), panel.fun = function(x, y) {
y = runif(21)
circos.lines(0:20/20, y, col = "red")
circos.lines(c(0,1), c(0,1), col="green")
y = runif(21)
circos.lines(20:0/20, y, col = "blue")
circos.lines(c(0,1), c(1,0), col="orange")
})
show.index()
circos.clear()
Sys.sleep(2)
}
for (theta in seq(-360, 360, by = 30)) {
circos.par(start.degree = theta, cell.padding=c(0,0,0,0), clock.wise=FALSE, gap.degree = 0)
circos.initialize(factors = factors, xlim = c(0, 1))
circos.trackPlotRegion(ylim = c(0, 1), panel.fun = function(x, y) {
y = runif(21)
circos.lines(0:20/20, y, col = "red")
circos.lines(c(0,1), c(0,1), col="green")
y = runif(21)
circos.lines(20:0/20, y, col = "blue")
circos.lines(c(0,1), c(1,0), col="orange")
})
show.index()
circos.clear()
Sys.sleep(2)
}
par(mar = c(1, 1, 1, 1))
factors = letters[1]
for (theta in seq(-360, 360, by = 60)) {
circos.par(start.degree = theta, cell.padding=c(0,0,0,0), gap.degree = 0)
circos.initialize(factors = factors, xlim = c(0, 1))
circos.trackPlotRegion(ylim = c(0, 1), panel.fun = function(x, y) {
y = runif(21)
circos.lines(0:20/20, y, col = "red")
circos.lines(c(0,1), c(0,1), col="green")
y = runif(21)
circos.lines(20:0/20, y, col = "blue")
circos.lines(c(0,1), c(1,0), col="orange")
})
show.index()
circos.clear()
Sys.sleep(2)
}
for (theta in seq(-360, 360, by = 60)) {
circos.par(start.degree = theta, cell.padding=c(0,0,0,0), clock.wise=FALSE, gap.degree = 0)
circos.initialize(factors = factors, xlim = c(0, 1))
circos.trackPlotRegion(ylim = c(0, 1), panel.fun = function(x, y) {
y = runif(21)
circos.lines(0:20/20, y, col = "red")
circos.lines(c(0,1), c(0,1), col="green")
y = runif(21)
circos.lines(20:0/20, y, col = "blue")
circos.lines(c(0,1), c(1,0), col="orange")
})
show.index()
circos.clear()
Sys.sleep(2)
}
#######################
# test one sector
factors = 1
par(mar = c(1, 1, 1, 1))
circos.par(cell.padding = c(0, 0, 0, 0), gap.degree = 0)
circos.initialize(factors = factors, xlim = c(0, 1))
circos.trackPlotRegion(ylim = c(0, 1))
circos.lines(c(0, 1), c(0, 1), col = "red")
circos.clear()
par(mar = c(1, 1, 1, 1))
circos.par(cell.padding = c(0, 0, 0, 0), gap.degree = 0, start.degree = 90)
circos.initialize(factors = factors, xlim = c(0, 1))
circos.trackPlotRegion(ylim = c(0, 1))
circos.lines(c(0, 1), c(0, 1))
circos.clear()
par(mar = c(1, 1, 1, 1))
circos.par(cell.padding = c(0, 0, 0, 0), gap.degree = 0, start.degree = -90)
circos.initialize(factors = factors, xlim = c(0, 1))
circos.trackPlotRegion(ylim = c(0, 1))
circos.lines(c(0, 1), c(0, 1))
circos.clear()
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