Files in 6Youcai/ABSOLUTE
ABSOLUTE

DESCRIPTION
NAMESPACE
R/ABSOLUTE_SCNA_fit_plots.R R/ABSOLUTE_comut_plot.R R/ABSOLUTE_mut_fit_plots.R R/ABSOLUTE_result_plot.R R/ABS_SCNA_extraction_functions.R R/ABS_SSNV_sample_mat_functions.R R/ABS_class_mutsig.R R/Allelic_CR_model.R R/CCF_DP_plots.R R/CN_MAF_file_lookup.R R/DP_utils.R R/ExtractReviewedResults.R R/HSCN_clonal_SCNA_fit_SSNVs.R R/HSCN_subclonal_SCNA_fit_SSNVs.R R/Power_calc.R R/SCNA_model_spec.R R/SSNV_model_spec.R R/TARGET.R R/Total_CR_model.R R/absolute.R R/batch_exec_ABSOLUTE.R R/calc_mode_functions.R R/chrarm_priors.R R/classify_WGD_by_profile.R R/coord_ascent_fit.R R/deconstruct_SCNAs.R R/densities.R R/detailed_SSNV_on_subclonal_HSCN_plot.R R/diploid_SNV_purity_opt.R R/disease_map.R R/extract_HAPSEG_segtab.R R/fit_DP_SCNA_model.R R/fit_SSNV_model.R R/fit_modes_SCNA_models.R R/fit_somatic_muts.R R/genome.R R/genome_HSCR_seg_plot.R R/get_SCNA_cancer_cell_fractions.R R/log_DP_post.R R/log_DP_post_fixed.R R/make_CAPSEG_seg_obj.R R/make_allelic_seg_obj.R R/match_PP-modes.R R/mode_filters.R R/mode_review_summary_plots.R R/mult_clust_EM.R R/platform_funcs.R R/plot_failed_samples.R R/plot_seglen_hist.R R/print_PP_call_table.R R/proc_GLAD_aux.R R/provisional_gaussian_mixture_mode_finder.R R/provisional_mode_sweep.R R/run_DP.R R/scatter_jobs.R R/summarize_ABS_results.R R/summarize_DP.R R/tCN_clonal_SCNA_fit_SSNVs.R R/tCN_subclonal_SCNA_fit_SSNVs.R R/write_called_SEG_MAF.R README.md
data/CGC.ssnv.RData
data/CN_genes.RData
data/COSMIC_protein_change_counts_v67_241013.RData
data/ChrArmPriorDb.RData
data/Imielinski2012_genesets.RData
data/Lawrence2014.RData
data/Lawrence2014_mutsig_by_cantype.RData
data/VanAllen2014_TARGET.RData
data/Zack2013_GISTIC_regions.RData
data/diseaseMap.RData
data/gencode.hg19.genes.RData
data/hg18_ChrArmsDat.RData
data/hg19_ChrArmsDat.RData
data/mm9_ChrArmsDat.RData
6Youcai/ABSOLUTE documentation built on June 10, 2017, 12:31 a.m.