jaccard_louvain.FNN: Perform Jaccard/Louvain clustering based on K-nearest...

Description Usage Arguments Value

View source: R/cluster.R

Description

Perform Jaccard/Louvain clustering based on K-nearest neighbors

Usage

1
jaccard_louvain.FNN(dat, k = 10, knn.matrix = NULL)

Arguments

dat

A matrix of features (rows) x samples (columns)

k

K nearest neighbors to use

knn.matrix

A K-nearest neighbors matrix. If NULL will be computed using FNN::get.knn()

Value

A list object with the cluster factor object and (cl) and Jaccard/Louvain results (result)


AllenInstitute/scrattch.hicat documentation built on May 5, 2019, 1:32 a.m.