Files in AurMad/STOCfree
STOC free model: prediction of probability of freedom from longitudinal data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/checks.R
R/glm_nwinf_lagged.R
R/herdBTM.R
R/intro.R
R/logit.R
R/month_id.R
R/sf_data.R
R/sf_data_priors_risk_factors.R
R/sf_data_priors_status_dyn.R
R/sf_data_priors_tests.R
R/sf_model.R
R/sf_model_JAGS_data.R
R/sf_model_JAGS_write_model.R
R/sf_model_Stan_data.R
R/sf_model_Stan_write_model.R
R/sf_output_dir.R
R/sf_output_mcmc_summaries.R
R/sf_output_month_prev.R
R/sf_output_param.R
R/sf_output_pred.R
README.Rmd
README.md
README_files/figure-gfm/plot of monthly prevalences-1.png
README_files/figure-gfm/plot of prior distributions for test characteristics-1.png
README_files/figure-gfm/plots of parameters of prior distributions for status dynamics on the logit scale-1.png
README_files/figure-gfm/plots of parameters of prior distributions for status dynamics on the probability scale-1.png
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STOCfree.Rproj
data/herdBTM.RData
data/intro.RData
inst/CITATION
man/STOCfree_JAGS.Rd
man/STOCfree_JAGS_data.Rd
man/STOCfree_Stan.Rd
man/STOCfree_data.Rd
man/add_risk_factor.Rd
man/date_from_lag.Rd
man/dnorm_logit.Rd
man/ess_STOCfree_param.Rd
man/extract_STOCfree_month_prev.Rd
man/extract_STOCfree_param.Rd
man/extract_STOCfree_pred.Rd
man/extract_herd_from_status_id.Rd
man/herdBTM.Rd
man/herd_summary.Rd
man/intro.Rd
man/invlogit.Rd
man/logit.Rd
man/logit_nwinf.Rd
man/logit_nwinf_lagged.Rd
man/make_month_id.Rd
man/make_nwinf_data.Rd
man/param_summary.Rd
man/plot.STOCfree_month_prev.Rd
man/plot.STOCfree_param.Rd
man/plot.STOCfree_pred.Rd
man/plot_priors_rf.Rd
man/plot_priors_status_dyn.Rd
man/plot_priors_tests.Rd
man/print.STOCfree_param.Rd
man/print.STOCfree_pred.Rd
man/read_STOCfree_month_prev.Rd
man/read_STOCfree_param.Rd
man/read_STOCfree_pred.Rd
man/set_priors_rf.Rd
man/set_priors_status_dyn.Rd
man/set_priors_tests.Rd
man/sf_add_risk_factor.Rd
man/sf_remove_risk_factor.Rd
man/show_priors_status_dyn.Rd
man/show_rf.Rd
man/show_tests.Rd
man/summary.STOCfree_param.Rd
man/summary.STOCfree_pred.Rd
man/write_JAGS_model.Rd
man/write_Stan_model.Rd
