Files in AxelitoMartin/GenieBPC
Project GENIE BioPharma Collaborative Data Processing Pipeline
.Rbuildignore
.Rprofile
.github/.gitignore
.github/CODE_OF_CONDUCT.md
.github/pull_request_template.md
.github/workflows/pkgdown.yaml
.github/workflows/pr-commands.yaml
.github/workflows/r-cmd-all-os.yml
.github/workflows/r_cmd_main.yml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
GenieBPC.Rproj
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/create_analytic_cohort.R
R/data.R
R/drug_regimen_sunburst.R
R/genieBPC-package.R
R/pull_data_synapse.R
R/select_unique_ngs.R
R/synapse_authentication.R
R/synapse_version.R
README.Rmd
README.md
_pkgdown.yml
codecov.yml
cran-comments.md
data-raw/drug_regimen_list.R
data-raw/nsclc_test_data.R
data-raw/regimen_abbreviations.R
data-raw/regimen_abbreviations.csv
data-raw/synapse_tables.R
data/.DS_Store
data/drug_regimen_list.rda
data/genie_panels.rda
data/nsclc_test_data.rda
data/regimen_abbreviations.rda
data/synapse_tables.rda
inst/WORDLIST
man/check_genie_access.Rd
man/create_analytic_cohort.Rd
man/dot-check_download_path.Rd
man/dot-get_and_query_file_url.Rd
man/dot-get_env.Rd
man/dot-get_synapse_token.Rd
man/dot-is_connected_to_genie.Rd
man/dot-pull_data_by_cohort.Rd
man/dot-resolve_duplicates.Rd
man/drug_regimen_list.Rd
man/drug_regimen_sunburst.Rd
man/figures/genieBPC_sunburst.png
man/figures/genieBPC_sunburst2.png
man/figures/geniebpc_hex_sticker.png
man/genieBPC-package.Rd
man/genie_panels.Rd
man/nsclc_test_data.Rd
man/pull_data_synapse.Rd
man/regimen_abbreviations.Rd
man/select_unique_ngs.Rd
man/set_synapse_credentials.Rd
man/synapse_tables.Rd
man/synapse_version.Rd
tests/spelling.R
tests/testthat.R
tests/testthat/test-check_synapse_login.R
tests/testthat/test-create_analytic_cohort.R
tests/testthat/test-drug_regimen_sunburst.R
tests/testthat/test-pull_data_synapse.R
tests/testthat/test-select_unique_ngs.R
tests/testthat/test-synapse_tables.R
tests/testthat/test-synapse_version.R
vignettes/.gitignore
vignettes/clinical_data_structure_vignette.Rmd
vignettes/create_analytic_cohort_vignette.Rmd
vignettes/drug_regimen_sunburst_vignette.Rmd
vignettes/geniebpc_hex_sticker.png
vignettes/pull_data_synapse_vignette.Rmd
vignettes/select_unique_ngs_vignette.Rmd
