clin.sample: An example of clinical sample level information file from...

clin.sampleR Documentation

An example of clinical sample level information file from IMPACT cbioPortal dataset.

Description

This set contains the publicly available data from cbioPortal sample level clinical data. The file is organized with each line corresponding to the information of each sample.

Usage

clin.sample

Format

A data frame with 500 observations on the following 16 variables

X.Patient.Identifier

Factor, IMPACT patient ID

Sample.Identifier

Factor, IMPACT sample ID

Sample.Collection.Source

Factor, was the sample collected in-house?

Specimen.Preservation.Type

Factor, indicates whether the patient is alive or deceased

Specimen.Type

Factor, Indicates if person has a history of smoking

DNA.Input
Sample.coverage
Tumor.Purity
Matched.Status

Overall survival in months

Sample.Type

Survival status

Primary.Tumor.Site

Survival status

Metastatic.Site

Survival status

Sample.Class

Survival status

Oncotree.Code

Survival status

Cancer.Type

Survival status

Cancer.Type.Detailed

Survival status

Source

https://cbioportal.mskcc.org/


AxelitoMartin/gnomeR documentation built on April 21, 2022, 3:01 p.m.