fusion: An example of fusions calls file from IMPACT cbioPortal...

In AxelitoMartin/gnomeR: Wrangle and analyze IMPACT and TCGA mutation data

An example of fusions calls file from IMPACT cbioPortal dataset

Description

This set contains the publicly available data from cbioPortal fusion data. The file is organized a classical MAF file.

Usage

fusion

Format

A data frame with 127 observations with 10 variables

Hugo_Symbol

Factor w/ 574 levels, Column containing all HUGO symbols genes

Entrez_Gene_Id

Entrez Gene ID (NA in this dataset)

Center

Cancer Center ID. All are MSKCC-DMP in this dataset

Tumor_Sample_Barcode

Factor, IMPACT sample ID

Fusion

Factor, type of fusion

DNA_support

Factor, all are yes in this data

RNA_support

Factor, all are unknown in this data

Method

All are NA in this data

Frame

Factor, in frame, out of frame or unknown

Comments

Source

https://cbioportal.mskcc.org/

AxelitoMartin/gnomeR documentation built on April 21, 2022, 3:01 p.m.