scale_color_pancan: Color scale creator to add gnomeR colors in ggplot

In AxelitoMartin/gnomeR: Wrangle and analyze IMPACT and TCGA mutation data

Color scale creator to add gnomeR colors in ggplot

Description

This color scale generator will interpolate between colors, even when discrete scales are provided. To use exact discrete colors, see examples in gnomer_palette

Usage

scale_color_pancan(palette = "main", discrete = TRUE, reverse = FALSE, ...)

Arguments

palette	Character name of palette in msk_palettes, supplied in quotes. Options include "main" (default), "pancan", "sunset".
discrete	Boolean indicating whether color aesthetic is discrete. Default is TRUE.
reverse	Boolean indicating whether the palette should be reversed. Default is FALSE.
...	Additional arguments passed to discrete_scale() or scale_color_gradientn(), used respectively when discrete is TRUE or FALSE

Examples

library(ggplot2)

# use a discrete color scale
ggplot(iris, aes(Sepal.Width, Sepal.Length, color = Species)) +
geom_point(size = 4) +
scale_color_pancan("pancan")

# use a continuous color scale
ggplot(iris, aes(Sepal.Width, Sepal.Length, color = Sepal.Length)) +
geom_point(size = 4, alpha = .6) +
scale_color_pancan(palette = "sunset", discrete = FALSE)

AxelitoMartin/gnomeR documentation built on April 21, 2022, 3:01 p.m.