Files in BIMIB-DISCo/LACE
Longitudinal Analysis of Cancer Evolution (LACE)
.Rbuildignore
.github/.gitignore
.github/workflows/check-bioc.yml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/LACEinterface.R
R/LACEview2.R
R/data.R
R/frontend.R
R/inference.R
R/timescape.R
R/utils.R
R/visualization.R
README.md
_pkgdown.yml
data/inference.RData
data/longitudinal_sc_variants.RData
inst/CITATION
inst/NEWS.Rd
inst/htmlwidgets/LACE.js
inst/htmlwidgets/LACE.yaml
inst/htmlwidgets/lib/bootstrap.min.css
inst/htmlwidgets/lib/bootstrap.min.js
inst/htmlwidgets/lib/colorbrewer.js
inst/htmlwidgets/lib/cytoscape-cxtmenu.js
inst/htmlwidgets/lib/cytoscape-dagre.js
inst/htmlwidgets/lib/cytoscape-popper.js
inst/htmlwidgets/lib/cytoscape.min.js
inst/htmlwidgets/lib/d3-color.min.js
inst/htmlwidgets/lib/d3-interpolate.min.js
inst/htmlwidgets/lib/d3-scale-chromatic.v1.min.js
inst/htmlwidgets/lib/d3.min.js
inst/htmlwidgets/lib/d3.tip.v0.6.3.js
inst/htmlwidgets/lib/d3.v4.js
inst/htmlwidgets/lib/dagre.min.js
inst/htmlwidgets/lib/jquery-2.1.4.js
inst/htmlwidgets/lib/jquery.dataTables.min.css
inst/htmlwidgets/lib/jquery.dataTables.min.js
inst/htmlwidgets/lib/jquery.layout.min.js
inst/htmlwidgets/lib/jquery.min.js
inst/htmlwidgets/lib/my_svg_crowbar.js
inst/htmlwidgets/lib/popper.js
inst/htmlwidgets/lib/run_timescape.js
inst/htmlwidgets/lib/timescape.css
inst/htmlwidgets/lib/timesweep.css
inst/htmlwidgets/lib/tippy.css
inst/htmlwidgets/lib/tippy.js
inst/htmlwidgets/lib/underscore.js
inst/htmlwidgets/lib/vanilla-dataTables.min.css
inst/htmlwidgets/lib/vanilla-dataTables.min.js
inst/shinyapp/alpha_beta_table.R
inst/shinyapp/annotation.R
inst/shinyapp/app.R
inst/shinyapp/check_demo.R
inst/shinyapp/depth_computation.R
inst/shinyapp/filters_computation.R
inst/shinyapp/inference_tab.R
inst/shinyapp/info_help.R
inst/shinyapp/install
inst/shinyapp/load_and_save.R
inst/shinyapp/make_lace_final_input.R
inst/shinyapp/pipeline_io_ctrl.R
inst/shinyapp/project_mgr.R
inst/shinyapp/project_tab.R
inst/shinyapp/step3_explore_lace_input_data.R
man/LACE.Rd
man/LACEview.Rd
man/compute.mutation.distance.Rd
man/compute.variants.error.rates.Rd
man/inference.Rd
man/lace_interface.Rd
man/lacedata.Rd
man/longitudinal.tree.plot.Rd
man/longitudinal_sc_variants.Rd
tests/testthat.R
tests/testthat/test_algorithm.R
vignettes/resources/Annotation_tab.png
vignettes/resources/Depth_tab.png
vignettes/resources/Inference_tab1.png
vignettes/resources/Inference_tab2.png
vignettes/resources/Project_tab.png
vignettes/resources/Projects_menu.png
vignettes/resources/figure2c.png
vignettes/resources/figure3c.png
vignettes/resources/figure4d.png
vignettes/resources/figure6c.png
vignettes/resources/figure6d.png
vignettes/resources/load_project.png
vignettes/resources/pd.cfg
vignettes/resources/select_variant.png
vignettes/v1_introduction.Rmd
vignettes/v2_running_LACE.Rmd
vignettes/v3_LACE_interface.Rmd
