R/reg2gene.R

In BIMSBbioinfo/reg2gene: Predicting the target genes for regulatory elements

#' reg2gene: An R package for predicting the target genes for regulatory elements
#'
#'
#'
#' @docType package
#' @name reg2gene
#'
#' 
#' @import genomation
#' @import GenomicRanges
#' @import IRanges
#' @import S4Vectors
#' @import stringr
#' @import foreach
#' @import glmnet
#' @import IRanges
#' @import InteractionSet
#' @import GenomicFeatures
#' @import Gviz
#' @import GenomicInteractions
#' @importFrom data.table data.table
#' @importFrom parallel mclapply
#' @importFrom DESeq2 estimateSizeFactorsForMatrix
#' @importFrom doMC registerDoMC
#' @importFrom preprocessCore normalize.quantiles
#' @importFrom energy dcor
#' @importFrom fitdistrplus fitdist
#' @importFrom qvalue qvalue
#' @importFrom ranger ranger
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