API for BRL-BCM/CTD
CTD method for “connecting the dots” in weighted graphs

Global functions
MSEA Source code
MSEA.EnrichmentScore Source code
MSEA.EnrichmentScore2 Source code
MSEA.HeatMapPlot Source code
MSEA.MetaboliteRanking Source code
MSEA.MetaboliteRanking_SingleProfile Source code
MSEA.ReadClsFile Source code
data.HMDBtoKEGG Man page Source code
data.LabeltoKEGG Man page Source code
data.surrogateProfiles Man page Source code
graph.diffuseP1 Man page
graph.diffuseP1Movie Man page Source code
graph.naivePruning Man page Source code
mle.blowoutSim Man page Source code
mle.getEncodingLength Man page Source code
mle.getEncodingLength_nullk Source code
mle.getMinPtDistance Man page Source code
mle.getPtSim Man page Source code
mle.kraftMcMillan Man page Source code
multiNode.getNodeRanks Man page Source code
multiNode.getNodeRanksMovie Man page Source code
multiNode.getPtBSbyK Man page Source code
pathway.ListMaps_metabolon Man page Source code
pathway.ListMetabolites_metabolon Man page Source code
plot.getPathwayIgraph Man page Source code
plot.hmSim Man page Source code
plot.knnSim Man page Source code
plot.mdsSim Man page Source code
plot.pathwayMap Man page Source code
singleNode.getNodeRanksMovie Man page Source code
singleNode.getNodeRanksN Man page Source code
singleNode.getPtBSbyK Man page Source code
stats.entropyFunction Man page Source code
stats.fishersMethod Man page Source code
stats.getMSEA_Metabolon Man page Source code
stats.getORA_Metabolon Man page Source code
BRL-BCM/CTD documentation built on Nov. 18, 2019, 6:37 p.m.