plot.getPathwayIgraph: plot.getPathwayIgraph

Description Usage Arguments Value Examples

View source: R/plot.getPathwayIgraph.r

Description

plot.getPathwayIgraph

Usage

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plot.getPathwayIgraph(input, Pathway.Name)

Arguments

input

- A list object of parameters (esp. from R shiny app). Required parameters are ptIDs, diagClass and pathwayMapId.

Pathway.Name

- The name of the pathway map for which you want the topological information.

Value

template.ig - Igraph object of selected pathway map.

Examples

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data(Miller2015)
# Input is supplied by R shiny app, but you can hard code parameters as a list object, too, to test functionality.
input = list()
input$ptIDs = colnames(Miller2015)[4]
input$diagClass = "paa"
input$pathwayMapId = "All"
ig = plot.getPathwayIgraph(input, Miller2015)
# Returns a blank template for selected pathway.
plot.igraph(ig, edge.arrow.size = 0.01)

BRL-BCM/CTD documentation built on Feb. 7, 2020, 1:42 a.m.