output: md_document: variant: markdown_github
Mendelian is an R package that can be used to filter sequencing variants. It enables filtering for both dominant and recessive traits, with a wide variety of options (including reduced penetrance and detectance).
This package can be installed from github using:
## Loading required package: devtools
## Downloading github repo BartBroeckx/Mendelian@master
## Installing Mendelian
## "C:/PROGRA~1/R/R-31~1.2/bin/i386/R" --vanilla CMD build \
## "C:\Users\Bart\AppData\Local\Temp\Rtmpq4FzNM\devtools13844ffe6994\BartBroeckx-Mendelian-958e034" \
## --no-resave-data --no-manual
##
## "C:/PROGRA~1/R/R-31~1.2/bin/i386/R" --vanilla CMD INSTALL \
## "C:/Users/Bart/AppData/Local/Temp/Rtmpq4FzNM/Mendelian_0.1.tar.gz" \
## --library="C:/Users/Bart/Documents/R/win-library/3.1" --install-tests
Detailed examples are available in the vignette.
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