Man pages for BenaroyaResearch/RNAseQC
Helper functions for conducting quality control of RNAseq data
| calc_PCAs | Run PCA on gene expression count data |
| calc_PCcors | Calculate correlations of principal components with quality... |
| convert_gene_names | Convert gene identifiers |
| estimate_saturation | Estimate saturation of genes based on rarefaction of reads |
| get_HGNC | Convert gene identifiers to HGNC gene symbols |
| logXYratio | Calculate ratio of total counts of genes mapping to the X and... |
| plot_metrics | Plot RNAseq metrics |
| plot_PCAs | Plot samples on pairwise sets of PCA axes, optionally... |
| plot_PCcor_heatmap | Plot a heatmap of correlations between PCs and other sample... |
| plot_PC_loadings | Plot PC loadings |
| plot_read_counts | Plot read counts by library |
| plot_saturation_curve | Plot saturation curves of genes based on reads object |
