API for Bioconductor-mirror/AneuFinder
Analysis of Copy Number Variation in Single-Cell-Sequencing Data

Global functions
AneuFinder Man page
AneuFinder-package Man page
Aneufinder Man page Source code
DNAcopy.findCNVs Man page Source code
aneuBiHMM Man page
aneuHMM Man page
bam2GRanges Man page Source code
bed2GRanges Man page Source code
biDNAcopy.findCNVs Man page Source code
binReads Man page Source code
binned.data Man page
binning Man page
bivariate.findCNVs Man page Source code
blacklist Man page Source code
check.integer Source code
check.logical Source code
check.multivariate.model Source code
check.nonnegative.integer.vector Source code
check.nonnegative.vector Source code
check.positive Source code
check.positive.integer Source code
check.positive.integer.vector Source code
check.positive.vector Source code
check.strand Source code
check.univariate.model Source code
check.univariate.modellist Source code
clusterByQuality Man page Source code
collapseBins Man page Source code
colors Man page
compareMethods Man page Source code
compareModels Man page Source code
consensusSegments Man page Source code
correctGC Man page Source code
correctMappability Man page Source code
dbinom.mean Source code
dbinom.prob Source code
dbinom.size Source code
dbinom.variance Source code
deltaWCalculator Man page Source code
dgeom.mean Source code
dgeom.variance Source code
dnbinom.mean Source code
dnbinom.prob Source code
dnbinom.size Source code
dnbinom.variance Source code
dzinbinom Man page Source code
estimateComplexity Man page Source code
export Man page
exportCNVs Man page Source code
exportGRanges Man page Source code
exportReadCounts Man page Source code
filterSegments Man page Source code
findBreakpoints Man page Source code
findCNVs Man page Source code
findCNVs.strandseq Man page Source code
fixedWidthBins Man page Source code
getDistinctColors Man page Source code
getQC Man page Source code
getSCEcoordinates Man page Source code
getSegments Man page Source code
get_rightxlim Source code
heatmapAneuploidies Man page Source code
heatmapGenomewide Man page Source code
heatmapGenomewideClusters Man page Source code
hotspotter Man page Source code
importBed Man page Source code
initializeStates Man page Source code
insertchr Source code
karyotypeMeasures Man page Source code
loadFromFiles Man page Source code
messageU Source code
mixedorder Source code
mixedsort Source code
onAttach Source code
plot.GRanges Man page Source code
plot.aneuBiHMM Man page Source code
plot.aneuHMM Man page Source code
plot.character Man page Source code
plot.karyogram Source code
plot.profile Source code
plotBivariateHistograms Source code
plotHeterogeneity Man page Source code
plotHistogram Man page Source code
plotKaryogram Man page Source code
plotProfile Man page Source code
plot_pca Man page Source code
print.aneuBiHMM Man page Source code
print.aneuHMM Man page Source code
pzinbinom Man page Source code
qc.bhattacharyya Man page Source code
qc.entropy Man page Source code
qc.sos Man page Source code
qc.spikiness Man page Source code
qualityControl Man page
qzinbinom Man page Source code
readConfig Man page Source code
rzinbinom Man page Source code
simulateReads Man page Source code
startTimedMessage Source code
stateColors Man page Source code
stopTimedMessage Source code
strandColors Man page Source code
stripchr Source code
subsetByCNVprofile Man page Source code
transCoord Man page Source code
univariate.findCNVs Man page Source code
variableWidthBins Man page Source code
writeConfig Man page Source code
zinbinom Man page
Bioconductor-mirror/AneuFinder documentation built on May 28, 2017, 11:07 p.m.