API for Bioconductor-mirror/Basic4Cseq
Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

Global functions
Data4Cseq Man page
Data4Cseq,character,numeric,numeric,data.frame,GAlignments-metho Man page
Data4Cseq,character,numeric,numeric,missing,missing-method Man page
Data4Cseq-class Man page
basic4CPlot Source code
checkRestrictionEnzymeSequence Man page Source code
checkRestrictionEnzymeSequence,character,character-method Man page
chooseNearCisFragments Man page Source code
chooseNearCisFragments,Data4Cseq,numeric-method Man page
createVirtualFragmentLibrary Man page
createVirtualFragmentLibrary,BSgenome,character,character,numeri Man page
createVirtualFragmentLibrary,DNAString,character,character,numer Man page
createVirtualFragmentLibraryMain Source code
createVirtualFragmentLibrary_BSgenome Source code
createVirtualFragmentLibrary_DNAString Source code
drawDigestionFragmentHistogram Man page Source code
drawDigestionFragmentHistogram,data.frame-method Man page
drawHeatmap Man page
drawHeatmap,Data4Cseq-method Man page
drawHeatmap,data.frame-method Man page
drawHeatmapMain Source code
drawHeatmap_Data4Cseq Source code
drawHeatmap_DataFrame Source code
drawMetaData Source code
exportVisualizationFragmentData Man page Source code
exportVisualizationFragmentData,Data4Cseq,character-method Man page
formatFragmentDataMain Source code
formatFragmentData_Data4Cseq Source code
formatFragmentData_DataFrame Source code
getReadDistribution Man page Source code
getReadDistribution,Data4Cseq-method Man page
giveEnzymeSequence Man page Source code
giveEnzymeSequence,character,character-method Man page
giveWigDataChromosome Source code
importVisualizationFragmentData Man page
importVisualizationFragmentData,character-method Man page
liverData Man page
liverDataRaw Man page
mportVisualizationFragmentData Source code
nearCisFragments Man page
nearCisFragments,Data4Cseq-method Man page
nearCisFragments<- Man page
nearCisFragments<-,Data4Cseq,data.frame-method Man page
normalizeFragmentData Man page Source code
normalizeFragmentData,Data4Cseq-method Man page
plotTransInteractions Man page
plotTransInteractions,character,character,numeric,character-meth Man page
plotTransInteractions,data.frame,character,numeric,data.frame-me Man page
plotTransInteractionsMain Source code
plotTransInteractions_Character Source code
plotTransInteractions_DataFrame Source code
pointsOfInterest Man page
pointsOfInterest,Data4Cseq-method Man page
pointsOfInterest<- Man page
pointsOfInterest<-,Data4Cseq,data.frame-method Man page
prepare4CseqData Man page Source code
prepare4CseqData,character,character,character,character-method Man page
printBEDFragmentLibrary Man page Source code
printBEDFragmentLibrary,character,character-method Man page
printWigFile Man page Source code
printWigFile,Data4Cseq-method Man page
rawFragments Man page
rawFragments,Data4Cseq-method Man page
rawFragments<- Man page
rawFragments<-,Data4Cseq,data.frame-method Man page
rawReads Man page
rawReads,Data4Cseq-method Man page
rawReads<- Man page
rawReads<-,Data4Cseq,GAlignments-method Man page
readLength Man page
readLength,Data4Cseq-method Man page
readLength<- Man page
readLength<-,Data4Cseq,numeric-method Man page
readPointsOfInterestFile Man page Source code
readPointsOfInterestFile,character-method Man page
readsToFragments Man page Source code
readsToFragments,Data4Cseq,character-method Man page
simulateDigestion Man page
simulateDigestion,character,character,BSgenome-method Man page
simulateDigestion,character,character,character-method Man page
simulateDigestionChromosome_DNAString Source code
simulateDigestionChromosome_MaskedDNAString Source code
simulateDigestion_BSgenome Source code
simulateDigestion_Character Source code
splitChromosome_DNAString Source code
viewpointChromosome Man page
viewpointChromosome,Data4Cseq-method Man page
viewpointChromosome<- Man page
viewpointChromosome<-,Data4Cseq,character-method Man page
viewpointInterval Man page
viewpointInterval,Data4Cseq-method Man page
viewpointInterval<- Man page
viewpointInterval<-,Data4Cseq,numeric-method Man page
visualizeViewpoint Man page
visualizeViewpoint,Data4Cseq-method Man page
visualizeViewpoint,data.frame-method Man page
visualizeViewpointMain Source code
visualizeViewpoint_Data4Cseq Source code
visualizeViewpoint_DataFrame Source code
Bioconductor-mirror/Basic4Cseq documentation built on Aug. 2, 2017, 3:27 p.m.