Files in Bioconductor-mirror/Basic4Cseq
Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data

DESCRIPTION
NAMESPACE
R/AllClasses.r R/AllGenerics.r R/checkRestrictionEnzymeSequence.r R/chooseNearCisFragments.r R/createVirtualFragmentLibrary.r R/drawHeatmap.r R/formatFragmentData.r R/getReadDistribution.r R/giveEnzymeSequence.r R/methods-Data4Cseq.r R/normalizeFragmentData.r R/plotTransInteractions.r R/prepare4CseqData.r R/printBEDFragmentLibrary.r R/printWigFile.r R/readPointsOfInterestFile.r R/readsToFragments.r R/simulateDigestion.r R/visualizeViewpoint.r
data/liverData.RData
data/liverDataRaw.RData
inst/extdata/RCircos_GRCm38_ideogram.csv
inst/extdata/RCircos_HG19_ideogram.csv
inst/extdata/enzymeData.csv
inst/extdata/fetalLiverCutter.sam
inst/extdata/fetalLiverShort.bam
inst/extdata/fetalLiverVP.bed
inst/extdata/fetalLiver_finalFragments.csv
inst/extdata/transInteractionData.txt
inst/extdata/veryShortExample.fastq
inst/extdata/veryShortLib.csv
inst/extdata/veryShortReference.fasta
inst/extdata/veryShortReference.fasta.amb
inst/extdata/veryShortReference.fasta.ann
inst/extdata/veryShortReference.fasta.bwt
inst/extdata/veryShortReference.fasta.pac
inst/extdata/veryShortReference.fasta.sa
inst/extdata/vfl_aagctt_catg_mm9_54_vp.csv
man/Data4Cseq-class.Rd man/Data4Cseq.Rd man/checkRestrictionEnzymeSequence.Rd man/chooseNearCisFragments.Rd man/createVirtualFragmentLibrary.Rd man/drawDigestionFragmentHistogram.Rd man/drawHeatmap.Rd man/exportVisualizationFragmentData.Rd man/getReadDistribution.Rd man/giveEnzymeSequence.Rd man/importVisualizationFragmentData.Rd man/liverData.Rd man/liverDataRaw.Rd man/normalizeFragmentData.Rd man/plotTransInteractions.Rd man/prepare4CseqData.Rd man/printBEDFragmentLibrary.Rd man/printWigFile.Rd man/readPointsOfInterestFile.Rd man/readsToFragments.Rd man/simulateDigestion.Rd man/visualizeViewpoint.Rd vignettes/images/drawHeatmap_Output.pdf vignettes/images/visualizeViewpoint_Output.pdf
vignettes/vignette.Rnw
Bioconductor-mirror/Basic4Cseq documentation built on Aug. 2, 2017, 3:27 p.m.