combineSources: Combine different sources of pathways

Description Usage Arguments Details Value Examples

View source: R/combineSources.R

Description

Given several sources of pathways with the same for the same id of the genes it merge them.

Usage

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Arguments

...

Lists of genes and their pathways.

Details

It assumes that the identifier of the genes are the same for both sources but if many aren't equal it issues a warning. Only unique pathways identifiers are returned.

Value

A single list with the pathways of each source on the same gene.

Examples

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DB1 <- list(g1 = letters[6:8], g2 = letters[1:5], g3 = letters[4:7])
DB2 <- list(g1 = c("one", "two"), g2 = c("three", "four"),
         g3 = c("another", "two"))
combineSources(DB1, DB2)
combineSources(DB1, DB1)
DB3 <- list(g1 = c("one", "two"), g2 = c("three", "four"),
         g4 = c("five", "six", "seven"), g5 = c("another", "two"))
combineSources(DB1, DB3) # A warning is expected

Bioconductor-mirror/BioCor documentation built on May 29, 2017, 12:07 a.m.