API for Bioconductor-mirror/CEMiTool
Finds Gene Co-expression Modules

Global functions
CEMiTool-class Man page
cem Man page
cemitool Man page Source code
cemoverlap Man page Source code
expr Man page
expr_data Man page
expr_data,CEMiTool-method Man page
expr_data<- Man page
expr_data<-,CEMiTool-method Man page
expr_pct_filter Man page Source code
filter_expr Man page
filter_expr,CEMiTool-method Man page
find_modules Man page
find_modules,CEMiTool-method Man page
generate_report Man page
generate_report,CEMiTool-method Man page
get_hubs Man page
get_hubs,CEMiTool-method Man page
gsea_data Man page
gsea_data,CEMiTool-method Man page
interactions_data Man page
interactions_data,CEMiTool-method Man page
interactions_data<- Man page
interactions_data<-,CEMiTool-method Man page
mod_colors Man page
mod_colors,CEMiTool-method Man page
mod_colors<- Man page
mod_colors<-,CEMiTool,character-method Man page
mod_gsea Man page
mod_gsea,CEMiTool-method Man page
mod_ora Man page
mod_ora,CEMiTool-method Man page
mod_summary Man page
mod_summary,CEMiTool-method Man page
module_genes Man page
module_genes,CEMiTool-method Man page
module_names Man page
module_names,CEMiTool-method Man page
new_cem Man page Source code
nmodules Man page
nmodules,CEMiTool-method Man page
ora Source code
ora_data Man page
ora_data,CEMiTool-method Man page
plot_beta_r2 Man page
plot_beta_r2,CEMiTool-method Man page
plot_gsea Man page
plot_gsea,CEMiTool-method Man page
plot_interaction Source code
plot_interactions Man page
plot_interactions,CEMiTool-method Man page
plot_mean_k Man page
plot_mean_k,CEMiTool-method Man page
plot_ora Man page
plot_ora,CEMiTool-method Man page
plot_ora_single Man page Source code
plot_profile Man page
plot_profile,CEMiTool-method Man page
read_gmt Man page Source code
sample_annot Man page
sample_annotation Man page
sample_annotation,CEMiTool-method Man page
sample_annotation<- Man page
sample_annotation<-,CEMiTool-method Man page
show,CEMiTool-method Man page
show_plot Man page
show_plot,CEMiTool-method Man page
vst Man page Source code
write_files Man page
write_files,CEMiTool-method Man page
Bioconductor-mirror/CEMiTool documentation built on Aug. 8, 2017, 12:37 a.m.