API for Bioconductor-mirror/CMA
Synthesis of microarray-based classification

Global functions
CMA Man page
CMA-package Man page
ElasticNetCMA Man page
ElasticNetCMA,ExpressionSet,character,missing-method Man page
ElasticNetCMA,data.frame,missing,formula-method Man page
ElasticNetCMA,matrix,factor,missing-method Man page
ElasticNetCMA,matrix,numeric,missing-method Man page
ElasticNetCMA-methods Man page
GeneSelection Man page
GeneSelection,ExpressionSet,character,missing-method Man page
GeneSelection,data.frame,missing,formula-method Man page
GeneSelection,matrix,factor,missing-method Man page
GeneSelection,matrix,numeric,missing-method Man page
GeneSelection-methods Man page
GenerateLearningsets Man page Source code
LassoCMA Man page
LassoCMA,ExpressionSet,character,missing-method Man page
LassoCMA,data.frame,missing,formula-method Man page
LassoCMA,matrix,factor,missing-method Man page
LassoCMA,matrix,numeric,missing-method Man page
LassoCMA-methods Man page
Planarplot Man page
Planarplot,ExpressionSet,character,missing-method Man page
Planarplot,data.frame,missing,formula-method Man page
Planarplot,matrix,factor,missing-method Man page
Planarplot,matrix,numeric,missing-method Man page
Planarplot-methods Man page
ROCinternal Man page Source code
best Man page
best,tuningresult-method Man page
bklr Man page Source code
bklr.predict Man page Source code
bkreg Man page Source code
boxplot,evaloutput-method Man page
care.dev Man page Source code
care.exp Man page Source code
characterplot Man page Source code
classification Man page
classification,ExpressionSet,character,missing-method Man page
classification,data.frame,missing,formula-method Man page
classification,matrix,factor,missing-method Man page
classification,matrix,numeric,missing-method Man page
classification-methods Man page
cloutput Man page
cloutput-class Man page
clvarseloutput Man page
clvarseloutput-class Man page
compBoostCMA Man page
compBoostCMA,ExpressionSet,character,missing-method Man page
compBoostCMA,data.frame,missing,formula-method Man page
compBoostCMA,matrix,factor,missing-method Man page
compBoostCMA,matrix,numeric,missing-method Man page
compBoostCMA-methods Man page
compare Man page
compare,list-method Man page
compare-methods Man page
dldaCMA Man page
dldaCMA,ExpressionSet,character,missing-method Man page
dldaCMA,data.frame,missing,formula-method Man page
dldaCMA,matrix,factor,missing-method Man page
dldaCMA,matrix,numeric,missing-method Man page
dldaCMA-methods Man page
evaloutput Man page
evaloutput-class Man page
evaluation Man page
evaluation,list-method Man page
evaluation-methods Man page
fdaCMA Man page
fdaCMA,ExpressionSet,character,missing-method Man page
fdaCMA,data.frame,missing,formula-method Man page
fdaCMA,matrix,factor,missing-method Man page
fdaCMA,matrix,numeric,missing-method Man page
fdaCMA-methods Man page
flexdaCMA Man page
flexdaCMA,ExpressionSet,character,missing-method Man page
flexdaCMA,data.frame,missing,formula-method Man page
flexdaCMA,matrix,factor,missing-method Man page
flexdaCMA,matrix,numeric,missing-method Man page
flexdaCMA-methods Man page
ftable,cloutput-method Man page
ftest Man page Source code
gbmCMA Man page
gbmCMA,ExpressionSet,character,missing-method Man page
gbmCMA,data.frame,missing,formula-method Man page
gbmCMA,matrix,factor,missing-method Man page
gbmCMA,matrix,numeric,missing-method Man page
gbmCMA-methods Man page
genesel Man page
genesel-class Man page
golub Man page
golubcrit Man page Source code
join Man page
join,list-method Man page
join-methods Man page
khan Man page
knnCMA Man page
knnCMA,ExpressionSet,character,missing-method Man page
knnCMA,data.frame,missing,formula-method Man page
knnCMA,matrix,factor,missing-method Man page
knnCMA,matrix,numeric,missing-method Man page
knnCMA-methods Man page
kruskaltest Man page Source code
ldaCMA Man page
ldaCMA,ExpressionSet,character,missing-method Man page
ldaCMA,data.frame,missing,formula-method Man page
ldaCMA,matrix,factor,missing-method Man page
ldaCMA,matrix,numeric,missing-method Man page
ldaCMA-methods Man page
learningsets Man page
learningsets-class Man page
limmatest Man page Source code
meanrm Source code
mklr Man page Source code
mklr.predict Man page Source code
mkreg Man page Source code
my.care.exp Man page Source code
nnetCMA Man page
nnetCMA,ExpressionSet,character,missing-method Man page
nnetCMA,data.frame,missing,formula-method Man page
nnetCMA,matrix,factor,missing-method Man page
nnetCMA,matrix,numeric,missing-method Man page
nnetCMA-methods Man page
obsinfo Man page
obsinfo,evaloutput-method Man page
penlogitfit Source code
pknnCMA Man page
pknnCMA,ExpressionSet,character,missing-method Man page
pknnCMA,data.frame,missing,formula-method Man page
pknnCMA,matrix,factor,missing-method Man page
pknnCMA,matrix,numeric,missing-method Man page
pknnCMA-methods Man page
plot,cloutput,missing-method Man page
plot,cloutput-method Man page Man page
plot,genesel,missing-method Man page
plot,genesel-method Man page
plot,tuningresult,missing-method Man page
plot,tuningresult-method Man page
plotprob Man page Source code
plrCMA Man page
plrCMA,ExpressionSet,character,missing-method Man page
plrCMA,data.frame,missing,formula-method Man page
plrCMA,matrix,factor,missing-method Man page
plrCMA,matrix,numeric,missing-method Man page
plrCMA-methods Man page
pls_ldaCMA Man page
pls_ldaCMA,ExpressionSet,character,missing-method Man page
pls_ldaCMA,data.frame,missing,formula-method Man page
pls_ldaCMA,matrix,factor,missing-method Man page
pls_ldaCMA,matrix,numeric,missing-method Man page
pls_ldaCMA-methods Man page
pls_lrCMA Man page
pls_lrCMA,ExpressionSet,character,missing-method Man page
pls_lrCMA,data.frame,missing,formula-method Man page
pls_lrCMA,matrix,factor,missing-method Man page
pls_lrCMA,matrix,numeric,missing-method Man page
pls_lrCMA-methods Man page
pls_rfCMA Man page
pls_rfCMA,ExpressionSet,character,missing-method Man page
pls_rfCMA,data.frame,missing,formula-method Man page
pls_rfCMA,matrix,factor,missing-method Man page
pls_rfCMA,matrix,numeric,missing-method Man page
pls_rfCMA-methods Man page
pnnCMA Man page
pnnCMA,ExpressionSet,character,missing-method Man page
pnnCMA,data.frame,missing,formula-method Man page
pnnCMA,matrix,factor,missing-method Man page
pnnCMA,matrix,numeric,missing-method Man page
pnnCMA-methods Man page
prediction Man page
prediction,ExpressionSet,character,ExpressionSet,missing-method Man page
prediction,data.frame,missing,data.frame,formula-method Man page
prediction,matrix,ANY,matrix,missing-method Man page
prediction-methods Man page
predoutput Man page
predoutput-class Man page
qdaCMA Man page
qdaCMA,ExpressionSet,character,missing-method Man page
qdaCMA,data.frame,missing,formula-method Man page
qdaCMA,matrix,factor,missing-method Man page
qdaCMA,matrix,numeric,missing-method Man page
qdaCMA-methods Man page
rfCMA Man page
rfCMA,ExpressionSet,character,missing-method Man page
rfCMA,data.frame,missing,formula-method Man page
rfCMA,matrix,factor,missing-method Man page
rfCMA,matrix,numeric,missing-method Man page
rfCMA-methods Man page
rfe Man page Source code
roc Man page
roc,cloutput-method Man page
roundvector Man page Source code
rowswaps Man page Source code
safeexp Man page Source code
scdaCMA Man page
scdaCMA,ExpressionSet,character,missing-method Man page
scdaCMA,data.frame,missing,formula-method Man page
scdaCMA,matrix,factor,missing-method Man page
scdaCMA,matrix,numeric,missing-method Man page
scdaCMA-methods Man page
show,cloutput-method Man page
show,evaloutput-method Man page
show,genesel-method Man page
show,learningsets-method Man page
show,predoutput-method Man page
show,tuningresult-method Man page
show,wmcr.result-method Man page
shrinkcat Man page Source code
shrinkldaCMA Man page
shrinkldaCMA,ExpressionSet,character,missing-method Man page
shrinkldaCMA,data.frame,missing,formula-method Man page
shrinkldaCMA,matrix,factor,missing-method Man page
shrinkldaCMA,matrix,numeric,missing-method Man page
shrinkldaCMA-methods Man page
summary,evaloutput-method Man page
svmCMA Man page
svmCMA,ExpressionSet,character,missing-method Man page
svmCMA,data.frame,missing,formula-method Man page
svmCMA,matrix,factor,missing-method Man page
svmCMA,matrix,numeric,missing-method Man page
svmCMA-methods Man page
toplist Man page
toplist,genesel-method Man page
ttest Man page Source code
tune Man page
tune,ExpressionSet,character,missing-method Man page
tune,data.frame,missing,formula-method Man page
tune,matrix,factor,missing-method Man page
tune,matrix,numeric,missing-method Man page
tune-methods Man page
tuningresult Man page
tuningresult-class Man page
varseloutput Man page
varseloutput-class Man page
weighted.mcr Man page
weighted.mcr,character,character,missing,character,matrix,factor Man page
weighted.mcr,character,character,numeric,character,matrix,factor Man page
weighted.mcr,character,character,numeric,character,matrix,numeri Man page
weighted.mcr-methods Man page
welchtest Man page Source code
wilcoxtest Man page Source code
wilcoxtestcma Source code
wmc Man page
wmc,matrix,numeric,numeric-method Man page
wmc-methods Man page
wmcr.result Man page
wmcr.result-class Man page
Bioconductor-mirror/CMA documentation built on May 29, 2017, 1:08 a.m.