Bioconductor-mirror/COHCAP: CpG Island Analysis Pipeline for Illumina Methylation Array and Targeted BS-Seq Data
Version 1.21.6

This package provides a pipeline to analyze single-nucleotide resolution methylation data (Illumina 450k/EPIC methylation array, targeted BS-Seq, etc.). It provides differential methylation for CpG Sites, differential methylation for CpG Islands, integration with gene expression data, with visualizaton options.

Getting started

Package details

AuthorCharles Warden
Bioconductor views DNAMethylation DifferentialMethylation Epigenetics MethylSeq Microarray
MaintainerCharles Warden <[email protected]>
LicenseGPL-3
Version1.21.6
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("Bioconductor-mirror/COHCAP")
Bioconductor-mirror/COHCAP documentation built on Aug. 6, 2017, 8:02 p.m.