API for Bioconductor-mirror/ChIPQC
Quality metrics for ChIPseq data

Global functions
ChIPQC Man page Source code
ChIPQC-package Man page
ChIPQCexperiment Man page
ChIPQCexperiment-class Man page
ChIPQCreport Man page
ChIPQCreport,ChIPQCexperiment-method Man page
ChIPQCreport,ChIPQCsample-method Man page
ChIPQCreport,list-method Man page
ChIPQCreport-methods Man page
ChIPQCsample Man page Source code
ChIPQCsample-class Man page
FragmentLengthCrossCoverage Man page
FragmentLengthCrossCoverage,ChIPQCexperiment-method Man page
FragmentLengthCrossCoverage,ChIPQCsample-method Man page
FragmentLengthCrossCoverage,list-method Man page
FragmentLengthCrossCoverage-methods Man page
GetGRanges Source code
Normalisedaveragepeaksignal Man page
Normalisedaveragepeaksignal,ChIPQCexperiment-method Man page
Normalisedaveragepeaksignal,ChIPQCsample-method Man page
Normalisedaveragepeaksignal,list-method Man page
Normalisedaveragepeaksignal-methods Man page
QCannotation Man page
QCannotation,ChIPQCexperiment-method Man page
QCannotation-methods Man page
QCcontrol Man page
QCcontrol,ChIPQCexperiment-method Man page
QCcontrol-methods Man page
QCdba Man page
QCdba,ChIPQCexperiment-method Man page
QCdba-methods Man page
QCmetadata Man page
QCmetadata,ChIPQCexperiment-method Man page
QCmetadata,list-method Man page
QCmetadata-methods Man page
QCmetrics Man page
QCmetrics,ChIPQCexperiment-method Man page
QCmetrics,ChIPQCsample-method Man page
QCmetrics,list-method Man page
QCmetrics-methods Man page
QCminimize Source code
QCsample Man page
QCsample,ChIPQCexperiment-method Man page
QCsample-methods Man page
ReadLengthCrossCoverage Man page
ReadLengthCrossCoverage,ChIPQCexperiment-method Man page
ReadLengthCrossCoverage,ChIPQCsample-method Man page
ReadLengthCrossCoverage,list-method Man page
ReadLengthCrossCoverage-methods Man page
RelativeCrossCoverage Man page
RelativeCrossCoverage,ChIPQCexperiment-method Man page
RelativeCrossCoverage,ChIPQCsample-method Man page
RelativeCrossCoverage,list-method Man page
RelativeCrossCoverage-methods Man page
RleSumAny Source code
addMatchingSample Source code
averagepeaksignal Man page
averagepeaksignal,ChIPQCexperiment-method Man page
averagepeaksignal,ChIPQCsample-method Man page
averagepeaksignal,list-method Man page
averagepeaksignal-methods Man page
blacklist_hg19 Man page
coveragehistogram Man page
coveragehistogram,ChIPQCexperiment-method Man page
coveragehistogram,ChIPQCsample-method Man page
coveragehistogram,list-method Man page
coveragehistogram-methods Man page
crosscoverage Man page
crosscoverage,ChIPQCexperiment-method Man page
crosscoverage,ChIPQCsample-method Man page
crosscoverage,list-method Man page
crosscoverage-methods Man page
doChIPQCsample Source code
do_plotCorHeatmap Source code
do_plotPCA Source code
duplicateRate Man page
duplicateRate,ChIPQCexperiment-method Man page
duplicateRate,ChIPQCsample-method Man page
duplicateRate,list-method Man page
duplicateRate-methods Man page
duplicates Man page
duplicates,ChIPQCexperiment-method Man page
duplicates,ChIPQCsample-method Man page
duplicates,list-method Man page
duplicates-methods Man page
example_QCexperiment Man page
extend Source code
findCovMaxPos Source code
flagtagcounts Man page
flagtagcounts,ChIPQCexperiment-method Man page
flagtagcounts,ChIPQCsample-method Man page
flagtagcounts,list-method Man page
flagtagcounts-methods Man page
fragmentlength Man page
fragmentlength,ChIPQCexperiment-method Man page
fragmentlength,ChIPQCsample-method Man page
fragmentlength,list-method Man page
fragmentlength-methods Man page
frip Man page
frip,ChIPQCexperiment-method Man page
frip,ChIPQCsample-method Man page
frip,list-method Man page
frip-methods Man page
getAnnotation Source code
getAtts Source code
getMeta Source code
getMetaFor Source code
list2matrix Source code
listadd Source code
makeCCplot Source code
makeCoveragePlot Source code
makeFriblPlot Source code
makeFripPlot Source code
makeIntroduction Source code
makePeakProfilePlot Source code
makeRapPlot Source code
makeRegiPlot Source code
makeSSDPlot Source code
makeSummarySection Source code
mapped Man page
mapped,ChIPQCexperiment-method Man page
mapped,ChIPQCsample-method Man page
mapped,list-method Man page
mapped-methods Man page
mergeMetadata Source code
peaks Man page
peaks,ChIPQCexperiment-method Man page
peaks,ChIPQCsample-method Man page
peaks,list-method Man page
peaks-methods Man page
plotCC Man page
plotCC,ChIPQCexperiment-method Man page
plotCC,ChIPQCsample-method Man page
plotCC,list-method Man page
plotCC-methods Man page
plotCorHeatmap Man page
plotCorHeatmap,ChIPQCexperiment-method Man page
plotCorHeatmap-methods Man page
plotCoverageHist Man page
plotCoverageHist,ChIPQCexperiment-method Man page
plotCoverageHist,ChIPQCsample-method Man page
plotCoverageHist,list-method Man page
plotCoverageHist-methods Man page
plotFribl Man page
plotFribl,ChIPQCexperiment-method Man page
plotFribl,ChIPQCsample-method Man page
plotFribl,list-method Man page
plotFribl-methods Man page
plotFrip Man page
plotFrip,ChIPQCexperiment-method Man page
plotFrip,ChIPQCsample-method Man page
plotFrip,list-method Man page
plotFrip-methods Man page
plotPeakProfile Man page
plotPeakProfile,ChIPQCexperiment-method Man page
plotPeakProfile,ChIPQCsample-method Man page
plotPeakProfile,list-method Man page
plotPeakProfile-methods Man page
plotPrincomp Man page
plotPrincomp,ChIPQCexperiment-method Man page
plotPrincomp-methods Man page
plotRap Man page
plotRap,ChIPQCexperiment-method Man page
plotRap,ChIPQCsample-method Man page
plotRap,list-method Man page
plotRap-methods Man page
plotRegi Man page
plotRegi,ChIPQCexperiment-method Man page
plotRegi,ChIPQCsample-method Man page
plotRegi,list-method Man page
plotRegi-methods Man page
plotSSD Man page
plotSSD,ChIPQCexperiment-method Man page
plotSSD,ChIPQCsample-method Man page
plotSSD,list-method Man page
plotSSD-methods Man page
readlength Man page
readlength,ChIPQCexperiment-method Man page
readlength,ChIPQCsample-method Man page
readlength,list-method Man page
readlength-methods Man page
reads Man page
reads,ChIPQCexperiment-method Man page
reads,ChIPQCsample-method Man page
reads,list-method Man page
reads-methods Man page
regi Man page
regi,ChIPQCexperiment-method Man page
regi,ChIPQCsample-method Man page
regi,list-method Man page
regi-methods Man page
ribl Man page
ribl,ChIPQCexperiment-method Man page
ribl,ChIPQCsample-method Man page
ribl,list-method Man page
ribl-methods Man page
rip Man page
rip,ChIPQCexperiment-method Man page
rip,ChIPQCsample-method Man page
rip,list-method Man page
rip-methods Man page
sampleQC Source code
show,ChIPQCexperiment-method Man page
show,ChIPQCsample-method Man page
showChIPQCexperiment Source code
ssd Man page
ssd,ChIPQCexperiment-method Man page
ssd,ChIPQCsample-method Man page
ssd,list-method Man page
ssd-methods Man page
table_RleList Source code
tamoxifen_QC Man page
Bioconductor-mirror/ChIPQC documentation built on Aug. 10, 2017, 9:47 a.m.