API for Bioconductor-mirror/ChIPseeker
ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

Global functions
. Man page
ChIPseeker Man page
ChIPseeker-package Man page
ChIPseekerEnv Source code
GRangesList Man page
IDType Source code
TXID2EG Source code
TXID2EGID Source code
TXID2TXEG Source code
addGeneAnno Source code
annoPie Source code
annoPie3D Source code
annotatePeak Man page Source code
as.GRanges Man page Source code
as.data.frame.csAnno Man page Source code
batchGetGSMsuppFile Source code
covplot Man page Source code
csAnno-class Man page
downloadGEO.internal Source code
downloadGEObedFiles Man page Source code
downloadGSMbedFiles Man page Source code
dropAnno Man page Source code
enrichAnnoOverlap Man page Source code
enrichOverlap.peak.internal Source code
enrichPeakOverlap Man page Source code
getAllFlankingGene Source code
getAnnoStat Source code
getBioRegion Man page Source code
getChrCov Source code
getCols Source code
getFirstHitIndex Source code
getGEOInfo Man page Source code
getGEOgenomeVersion Man page Source code
getGEOspecies Man page Source code
getGSMsuppFile Source code
getGene Source code
getGeneAnno Man page Source code
getGenomicAnnoStat Source code
getGenomicAnnotation Man page Source code
getGenomicAnnotation.internal Source code
getGenomicVersion Source code
getIntersectLength Source code
getNearestFeatureIndicesAndDistances Man page Source code
getPromoters Man page Source code
getSampleFiles Man page Source code
getSgn Source code
getTagCiMatrix Source code
getTagCount Source code
getTagMatrix Man page Source code
get_exonList Source code
get_gsminfo Source code
get_intronList Source code
gsminfo Man page
info Man page
is.dir Source code
isBedFile Source code
isPeakFeatureOverlap Source code
list_to_dataframe Source code
loadPeak Source code
loadTxDb Source code
onAttach Source code
overlap Man page Source code
parseBootCiPerc Source code
parse_targetPeak_Param Source code
peak2DF Source code
peakDF2GRanges Source code
peakHeatmap Man page Source code
peakHeatmap.internal Source code
peakHeatmap.internal2 Source code
plotAnnoBar Man page Man page Man page
plotAnnoBar,csAnno,ANY-method Man page
plotAnnoBar,csAnno-method Man page
plotAnnoBar,list-method Man page
plotAnnoBar.data.frame Man page Source code
plotAnnoPie Man page Man page
plotAnnoPie,csAnno,ANY-method Man page
plotAnnoPie,csAnno-method Man page
plotAnnoPie.csAnno Man page Source code
plotAvgProf Man page Source code
plotAvgProf.internal Source code
plotAvgProf2 Man page Source code
plotDistToTSS Man page Man page Man page
plotDistToTSS,csAnno,ANY-method Man page
plotDistToTSS,csAnno-method Man page
plotDistToTSS,list-method Man page
plotDistToTSS.data.frame Man page Source code
prepareGSMInfo Source code
readPeakFile Man page Source code
reexports Man page
seq2gene Man page Source code
show Man page
show,csAnno,ANY-method Man page
show,csAnno-method Man page
shuffle Man page Source code
sortChrName Source code
tagHeatmap Man page Source code
tagMatrixList Man page
ucsc_release Man page
updateGenomicAnnotation Source code
upsetplot Man page
upsetplot,csAnno-method Man page
upsetplot.csAnno Source code
vennpie Man page Man page
vennpie,csAnno-method Man page
vennpie.csAnno Source code
vennplot Man page Source code
vennplot.peakfile Man page Source code
Bioconductor-mirror/ChIPseeker documentation built on July 7, 2017, 10:02 p.m.