Files in Bioconductor-mirror/ChIPseeker
ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

.Rbuildignore
.gitignore
.svnignore
DESCRIPTION
GEODATA
Makefile
NAMESPACE
NEWS
R/AllGenerics.R R/ChIPseeker-package.R R/GEO.R R/addGeneAnno.R R/annotatePeak.R R/covplot.R R/csAnno.R R/enrichOverlap.R R/getFlankingGene.R R/getGenomicAnnotation.R R/getNearestFeatureIndicesAndDistances.R R/plotAnno.R R/plotDistToTSS.R R/plotTagMatrix.R R/readPeakFile.R R/seq2gene.R R/tagMatrix.R R/upsetplot.R R/utilities.R R/vennpie.R R/vennplot.R R/zzz.R README.Rmd README.md
data/gsminfo.rda
data/tagMatrixList.rda
data/ucsc_release.rda
inst/CITATION
inst/extdata/GEO_sample_data/GSM1174480_ARmo_0M_peaks.bed.gz
inst/extdata/GEO_sample_data/GSM1174481_ARmo_1nM_peaks.bed.gz
inst/extdata/GEO_sample_data/GSM1174482_ARmo_100nM_peaks.bed.gz
inst/extdata/GEO_sample_data/GSM1295076_CBX6_BF_ChipSeq_mergedReps_peaks.bed.gz
inst/extdata/GEO_sample_data/GSM1295077_CBX7_BF_ChipSeq_mergedReps_peaks.bed.gz
inst/extdata/processedGSM.rda
inst/extdata/sample_peaks.txt
man/ChIPseeker-package.Rd man/annotatePeak.Rd man/as.GRanges.Rd man/as.data.frame.csAnno.Rd man/covplot.Rd man/csAnno-class.Rd man/dotFun.Rd man/downloadGEObedFiles.Rd man/downloadGSMbedFiles.Rd man/dropAnno.Rd man/enrichAnnoOverlap.Rd man/enrichPeakOverlap.Rd man/getBioRegion.Rd man/getGEOInfo.Rd man/getGEOgenomeVersion.Rd man/getGEOspecies.Rd man/getGeneAnno.Rd man/getGenomicAnnotation.Rd man/getNearestFeatureIndicesAndDistances.Rd man/getPromoters.Rd man/getSampleFiles.Rd man/getTagMatrix.Rd man/info.Rd man/overlap.Rd man/peakHeatmap.Rd man/plotAnnoBar-methods.Rd man/plotAnnoBar.data.frame.Rd man/plotAnnoPie-methods.Rd man/plotAnnoPie.csAnno.Rd man/plotAvgProf.Rd man/plotAvgProf2.Rd man/plotDistToTSS-methods.Rd man/plotDistToTSS.data.frame.Rd man/readPeakFile.Rd man/reexports.Rd man/seq2gene.Rd man/show-methods.Rd man/shuffle.Rd man/tagHeatmap.Rd man/upsetplot-methods.Rd man/vennpie-methods.Rd man/vennplot.Rd man/vennplot.peakfile.Rd tests/testthat.R tests/testthat/test-bed.R tests/testthat/test-txdb.R vignettes/ChIPseeker.Rmd
vignettes/ChIPseeker.bib
vignettes/figures/chrCoverage.png
vignettes/figures/plotAvgProf_boot.png
vignettes/figures/plotAvgProf_boot_list.png
vignettes/figures/upset.png
vignettes/figures/upset_vennpie.png
vignettes/nature.csl
Bioconductor-mirror/ChIPseeker documentation built on July 7, 2017, 10:02 p.m.