Man pages for Bioconductor-mirror/ChIPseeker
ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

annotatePeakannotatePeak
as.data.frame.csAnnoas.data.frame.csAnno
as.GRangesas.GRanges
ChIPseeker-packageChIP-SEQ Annotation, Visualization and Comparison
covplotcovplot
csAnno-classClass "csAnno" This class represents the output of ChIPseeker...
dotFun.
downloadGEObedFilesdownloadGEObedFiles
downloadGSMbedFilesdownloadGSMbedFiles
dropAnnodropAnno
enrichAnnoOverlapenrichAnnoOverlap
enrichPeakOverlapenrichPeakOverlap
getBioRegiongetBioRegion
getGeneAnnogetGeneAnno
getGenomicAnnotationgetGenomicAnnotation
getGEOgenomeVersiongetGEOgenomeVersion
getGEOInfogetGEOInfo
getGEOspeciesgetGEOspecies
getNearestFeatureIndicesAndDistancesgetNearestFeatureIndicesAndDistances
getPromotersgetPromoters
getSampleFilesgetSampleFiles
getTagMatrixgetTagMatrix
infoInformation Datasets
overlapoverlap
peakHeatmappeakHeatmap
plotAnnoBar.data.frameplotAnnoBar.data.frame
plotAnnoBar-methodsplotAnnoBar method generics
plotAnnoPie.csAnnoplotAnnoPie
plotAnnoPie-methodsplotAnnoPie method generics
plotAvgProfplotAvgProf
plotAvgProf2plotAvgProf
plotDistToTSS.data.frameplotDistToTSS.data.frame
plotDistToTSS-methodsplotDistToTSS method generics
readPeakFilereadPeakFile
reexportsObjects exported from other packages
seq2geneseq2gene
show-methodsshow method
shuffleshuffle
tagHeatmaptagHeatmap
upsetplot-methodsupsetplot method
vennpie-methodsvennpie method generics
vennplotvennplot
vennplot.peakfilevennplot.peakfile
Bioconductor-mirror/ChIPseeker documentation built on July 7, 2017, 10:02 p.m.