API for Bioconductor-mirror/ClassifyR
A framework for two-class classification problems, with applications to differential variability and differential distribution testing

Global functions
ClassifyResult Man page
ClassifyResult,character,character,character,character,character Man page
ClassifyResult-class Man page
DMDselection Man page
DMDselection,ExpressionSet-method Man page
DMDselection,matrix-method Man page
KolmogorovSmirnovSelection Man page
KolmogorovSmirnovSelection,ExpressionSet-method Man page
KolmogorovSmirnovSelection,matrix-method Man page
KullbackLeiblerSelection Man page
KullbackLeiblerSelection,ExpressionSet-method Man page
KullbackLeiblerSelection,matrix-method Man page
PredictParams Man page
PredictParams,ANY-method Man page
PredictParams,function-method Man page
PredictParams-class Man page
ROCplot Man page
ROCplot,list-method Man page
ResubstituteParams Man page
ResubstituteParams,ANY,ANY,ANY-method Man page
ResubstituteParams,numeric,character,character-method Man page
ResubstituteParams-class Man page
SelectParams Man page
SelectParams,ANY-method Man page
SelectParams,functionOrList-method Man page
SelectParams-class Man page
SelectResult Man page
SelectResult,character,character,list,list-method Man page
SelectResult-class Man page
TrainParams Man page
TrainParams,ANY-method Man page
TrainParams,function-method Man page
TrainParams-class Man page
TransformParams Man page
TransformParams,ANY-method Man page
TransformParams,function-method Man page
TransformParams-class Man page
actualClasses Man page
actualClasses,ClassifyResult-method Man page
bartlettSelection Man page
bartlettSelection,ExpressionSet-method Man page
bartlettSelection,matrix-method Man page
binValues Source code
calcPerformance Man page
calcPerformance,ClassifyResult-method Man page
classifyInterface Man page Source code
densityCrossover Source code
distribution Man page
distribution,ClassifyResult-method Man page
doSelection Source code
doTest Source code
doTrain Source code
doTransform Source code
edgeRselection Man page
edgeRselection,ExpressionSet-method Man page
edgeRselection,matrix-method Man page
features Man page
features,ClassifyResult-method Man page
fisherDiscriminant Man page
fisherDiscriminant,ExpressionSet-method Man page
fisherDiscriminant,matrix-method Man page
functionOrList Man page
functionOrList-class Man page
getLocationsAndScales Man page
getLocationsAndScales,ExpressionSet-method Man page
getLocationsAndScales,matrix-method Man page
leveneSelection Man page
leveneSelection,ExpressionSet-method Man page
leveneSelection,matrix-method Man page
likelihoodRatioSelection Man page
likelihoodRatioSelection,ExpressionSet-method Man page
likelihoodRatioSelection,matrix-method Man page
limmaSelection Man page
limmaSelection,ExpressionSet-method Man page
limmaSelection,matrix-method Man page
medianDifferenceSelection Man page
medianDifferenceSelection,ExpressionSet-method Man page
medianDifferenceSelection,matrix-method Man page
methodFormals Source code
mixModelsTest Man page
mixModelsTest,list,ExpressionSet-method Man page
mixModelsTest,list,matrix-method Man page
mixModelsTrain Man page
mixModelsTrain,ExpressionSet-method Man page
mixModelsTrain,matrix-method Man page
mixmodels Man page
naiveBayesKernel Man page
naiveBayesKernel,ExpressionSet-method Man page
naiveBayesKernel,matrix-method Man page
nearestShrunkenCentroidPredictInterface Man page
nearestShrunkenCentroidPredictInterface,pamrtrained,ExpressionSe Man page
nearestShrunkenCentroidPredictInterface,pamrtrained,matrix-metho Man page
nearestShrunkenCentroidSelectionInterface Man page
nearestShrunkenCentroidSelectionInterface,ExpressionSet-method Man page
nearestShrunkenCentroidSelectionInterface,matrix-method Man page
nearestShrunkenCentroidTrainInterface Man page
nearestShrunkenCentroidTrainInterface,ExpressionSet-method Man page
nearestShrunkenCentroidTrainInterface,matrix-method Man page
pamrtrained Man page
pamrtrained-class Man page
performance Man page
performance,ClassifyResult-method Man page
performancePlot Man page
performancePlot,list-method Man page
pickRows Source code
plotFeatureClasses Man page
plotFeatureClasses,ExpressionSet-method Man page
plotFeatureClasses,matrix-method Man page
predictions Man page
predictions,ClassifyResult-method Man page
previousSelection Man page
previousSelection,ExpressionSet-method Man page
previousSelection,matrix-method Man page
rankingPlot Man page
rankingPlot,list-method Man page
runTest Man page
runTest,ExpressionSet-method Man page
runTest,matrix-method Man page
runTests Man page
runTests,ExpressionSet-method Man page
runTests,matrix-method Man page
samplesMetricMap Man page
samplesMetricMap,list-method Man page
selectionPlot Man page
selectionPlot,list-method Man page
show,ClassifyResult-method Man page
show,SelectResult-method Man page
subtractFromLocation Man page
subtractFromLocation,ExpressionSet-method Man page
subtractFromLocation,matrix-method Man page
totalPredictions Man page
totalPredictions,ClassifyResult-method Man page
tunedParameters Man page
tunedParameters,ClassifyResult-method Man page
validationText Source code
Bioconductor-mirror/ClassifyR documentation built on July 1, 2017, 4:09 a.m.