Files in Bioconductor-mirror/CrispRVariants
Tools for counting and visualising mutations in a target location

DESCRIPTION
NAMESPACE
R/CrisprRun.R R/CrisprSet.R R/abifToFastq.R R/accessors.R R/barplotAlleleFreqs.R R/crispRvariants_data.R R/excludeFromBam.R R/findChimeras.R R/initialisers.R R/mergeChimeras.R R/plotAlignments.R R/plotChimeras.R R/plotFreqHeatmap.R R/plotVariants.R R/readsByPCRPrimer.R R/refFromAlns.R R/reverseCigar.R R/seqsToAln.R R/utils.R R/writeFastq.R
data/gol_clutch1.rda
inst/CITATION
inst/NEWS.Rd
inst/doc/user_guide.R inst/doc/user_guide.Rmd inst/doc/user_guide.pdf
inst/extdata/Danio_rerio.Zv9.73.gol.sqlite
inst/extdata/GRCz10_81_ptena_txdb.sqlite
inst/extdata/IM2033.ab1
inst/extdata/ab1/ptena/phenotype/embryo1/AB2001.ab1
inst/extdata/bam/ab1_ptena_phenotype_embryo_1_s.bam
inst/extdata/bam/ab1_ptena_phenotype_embryo_1_s.bam.bai
inst/extdata/bam/ab1_ptena_phenotype_embryo_2_s.bam
inst/extdata/bam/ab1_ptena_phenotype_embryo_2_s.bam.bai
inst/extdata/bam/ab1_ptena_uninjected_embryo_1_s.bam
inst/extdata/bam/ab1_ptena_uninjected_embryo_1_s.bam.bai
inst/extdata/bam/ab1_ptena_wildtype_looking_embryo_1_s.bam
inst/extdata/bam/ab1_ptena_wildtype_looking_embryo_1_s.bam.bai
inst/extdata/bam/ab1_ptena_wildtype_looking_embryo_2_s.bam
inst/extdata/bam/ab1_ptena_wildtype_looking_embryo_2_s.bam.bai
inst/extdata/bed/guide.bed
inst/extdata/cntnap2b_test_data.fastq.gz
inst/extdata/cntnap2b_test_data_guide.bed
inst/extdata/cntnap2b_test_data_s.bam
inst/extdata/gol_F1_clutch_1_embryo_1_s.bam
inst/extdata/gol_F1_clutch_1_embryo_1_s.bam.bai
inst/extdata/gol_F1_clutch_1_embryo_2_s.bam
inst/extdata/gol_F1_clutch_1_embryo_2_s.bam.bai
inst/extdata/gol_F1_clutch_1_embryo_3_s.bam
inst/extdata/gol_F1_clutch_1_embryo_3_s.bam.bai
inst/extdata/gol_F1_clutch_1_embryo_4_s.bam
inst/extdata/gol_F1_clutch_1_embryo_4_s.bam.bai
inst/extdata/gol_F1_clutch_1_embryo_5_s.bam
inst/extdata/gol_F1_clutch_1_embryo_5_s.bam.bai
inst/extdata/gol_F1_clutch_1_embryo_6_s.bam
inst/extdata/gol_F1_clutch_1_embryo_6_s.bam.bai
inst/extdata/gol_F1_clutch_1_embryo_7_s.bam
inst/extdata/gol_F1_clutch_1_embryo_7_s.bam.bai
inst/extdata/gol_F1_clutch_1_embryo_8_s.bam
inst/extdata/gol_F1_clutch_1_embryo_8_s.bam.bai
inst/extdata/gol_F1_clutch_2_embryo_4_s.bam
inst/extdata/gol_F1_clutch_2_embryo_4_s.bam.bai
inst/extdata/gol_F1_metadata.txt
inst/extdata/gol_F1_metadata_small.txt
inst/extdata/metadata/metadata.xls
inst/extdata/ptena_GRCHz10_ref.rda
inst/extdata/wtx_Sanger.png
man/CrisprRun-class.Rd man/CrisprSet-class.Rd man/abifToFastq.Rd man/addClipped.Rd man/addCodonFrame.Rd man/alns.Rd man/annotateGenePlot.Rd man/arrangePlots.Rd man/barplotAlleleFreqs.Rd man/collapsePairs.Rd man/consensusSeqs.Rd man/dispatchDots.Rd man/excludeFromBam.Rd man/findChimeras.Rd man/findSNVs.Rd man/getChimeras.Rd man/gol_clutch1.Rd man/indelCounts.Rd man/makeAlignmentTilePlot.Rd man/mergeChimeras.Rd man/mergeCrisprSets.Rd man/mutationEfficiency.Rd man/narrowAlignments.Rd man/plotAlignments.Rd man/plotChimeras.Rd man/plotFreqHeatmap.Rd man/plotVariants.Rd man/rcAlns.Rd man/readTargetBam.Rd man/readsByPCRPrimer.Rd man/readsToTarget.Rd man/refFromAlns.Rd man/reverseCigar.Rd man/rmMultiPCRChimera.Rd man/seqsToAln.Rd man/seqsToPartialAln.Rd man/setDNATileColours.Rd man/transformAlnsToLong.Rd man/variantCounts.Rd man/writeFastq.Rd readme.Rmd
readme.html
readme.md tests/testthat.R tests/testthat/test-accessors.R tests/testthat/test-annotate-plot.R tests/testthat/test-initialisers.R tests/testthat/test-narrowAlignments.R tests/testthat/test-plotAlignments.R tests/testthat/test-refsToAln.R tests/testthat/test-seqsToAln.R tests/testthat/test-utils.R vignettes/user_guide.Rmd
Bioconductor-mirror/CrispRVariants documentation built on July 19, 2017, 8:49 a.m.