Description Slots/List Components Methods Author(s) See Also

A simple list-based class to store DEDS results.`DEDS`

objects
are usually created by functions `deds.pval`

,
`deds.stat`

and `deds.stat.linkC`

.

`DEDS`

objects can be created by `new("DEDS",deds)`

where
`deds`

is a list. This class contains no slots, but objects
should contain the following list components:

`E` : | A numeric vector of the most extreme point in the direction of differential expression. |

`p` : | A numeric vector of q- or adjusted p-values. |

`geneOrder` : | An integer vector giving the index of the top genes in terms of differential expression. |

`stats` : | A matrix of p values or statistics. |

`options` : | A character vector of options used in the test. |

This class inherits directly from class `list`

, so any operation
appropriate for lists will work on objects of this class. In addition,
Other functions which operate on `DEDS`

objects include
`pairs`

and `hist`

.

Yuanyuan Xiao, [email protected],

Jean Yee Hwa Yang, [email protected].

`deds.pval`

, `deds.stat`

,
`deds.stat.linkC`

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