Report of DEG analysis

createReport | Create report of RNAseq DEG anlaysis |

degBI | Get the estimates of the fold change (FC) mean from a FC... |

degBIcmd | Apply bayesian inference to estimate the average fold change... |

degCheckFactors | Distribution of gene ratios used to calculate Size Factors. |

degComb | Get random combinations of two groups |

degCovariates | Find correlation between PCs and covariates |

degFC | get the FC for each gene between two groups |

degFilter | Filter genes by group |

degMB | Distribution of expression of DE genes compared to the... |

degMDS | Plot MDS from normalized count data |

degMean | Distribution of pvalues by expression range |

degMerge | Integrate data comming from degPattern into one data object |

degMV | Correlation of the standard desviation and the mean of the... |

degNcomb | Get number of potential combinations of two vectors |

degObj | Create a deg object that can be used to plot expression... |

degPatterns | Make groups of genes using expression profile |

degPCA | smart PCA from count matrix data |

degPlot | Plot top genes allowing more variables to color and shape... |

degPlotWide | Plot selected genes on a wide format |

degPR | plot the correlation between the rank according estimator and... |

degQC | Plot main figures showing p-values distribution and... |

degRank | Get rank data frame with best score on the top |

DEGreportSet | List of process geuvadis data to test the package |

degResults | Complete report from DESeq2 analysis |

degVar | Distribution of pvalues by standard desviation range |

degVB | Distribution of the standard desviation of DE genes compared... |

degVolcano | Create volcano plot from log2FC and adjusted pvalues data... |

geneInfo | data.frame with chromose information for each gene |

humanSexDEedgeR | DGEList object for DE genes betwen Male and Females |

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