Man pages for Bioconductor-mirror/DEGreport
Report of DEG analysis

createReportCreate report of RNAseq DEG anlaysis
degBIGet the estimates of the fold change (FC) mean from a FC...
degBIcmdApply bayesian inference to estimate the average fold change...
degCheckFactorsDistribution of gene ratios used to calculate Size Factors.
degCombGet random combinations of two groups
degCovariatesFind correlation between PCs and covariates
degFCget the FC for each gene between two groups
degFilterFilter genes by group
degMBDistribution of expression of DE genes compared to the...
degMDSPlot MDS from normalized count data
degMeanDistribution of pvalues by expression range
degMergeIntegrate data comming from degPattern into one data object
degMVCorrelation of the standard desviation and the mean of the...
degNcombGet number of potential combinations of two vectors
degObjCreate a deg object that can be used to plot expression...
degPatternsMake groups of genes using expression profile
degPCAsmart PCA from count matrix data
degPlotPlot top genes allowing more variables to color and shape...
degPlotWidePlot selected genes on a wide format
degPRplot the correlation between the rank according estimator and...
degQCPlot main figures showing p-values distribution and...
degRankGet rank data frame with best score on the top
DEGreportSetList of process geuvadis data to test the package
degResultsComplete report from DESeq2 analysis
degVarDistribution of pvalues by standard desviation range
degVBDistribution of the standard desviation of DE genes compared...
degVolcanoCreate volcano plot from log2FC and adjusted pvalues data...
geneInfodata.frame with chromose information for each gene
humanSexDEedgeRDGEList object for DE genes betwen Male and Females
Bioconductor-mirror/DEGreport documentation built on July 7, 2017, 10:53 p.m.